Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02435 ATGACGGAATCACCAACCGATTCACGCACTCCTCCATTGGGCCCCACACCAGCCACCGTGATTCATCCACGACGCGTGCCGTTCGAACACGGTCTTTTACCTATCCCGCGCCTCATCTTCTCCGACCCCGCACAAACCCTAATCTCCTTGAAACAGAAGCTTCTAGAATTATCCTCTAACAATAACCGAGTTGACTCGGCCGCGATTTCTGAGTCGTTGCAGATCTCCGTCGAACAAGCTAGGCTTGTTGTTGAGACTCTCGTTTCGGTTCTCCCTGCTGAATCCGAATCTGATAGCGTCGATGTTCATGATCTCGTTTTGTTTCTATACATTCAATCCTACAAGAGGCTCCTCCCGCGGACGCATAAGGATTCCGCCGCTGTTGCGGATGTTTGGCCTTCCACTTCCGCTTTTGATGGATACTTGTCCGCTCTCACGCCGCTTCAGCTTGTCCGGAGCAACAGTAAGCGGTTTATGCCGTCGCAGGGGGATGAAGAAGCGCATCAGCTGTCTTATCTGCAAAAGCATTTGGCTAACATTGTGTCTCTACTAGCAGAGCCTGTGGAGGGGGAAAGTGAAGAATCTCTGGTTTTAACCATGGATAGATTTGAGCACCTTGGTTTTCTATTTCAATATGGTGATAAAGGACTTGAAGGAAATTCATTGAGTCAATCTTCTCCTTTTTTTGCAAATTCGGATCCTAACATGCCTGCCGTTCCTGCTCCCGCTTCCCAAGTTCATGATTGGCTTCTGCAGAACATAGCTTCTGCTTTGGAACGCATTGCTGAACGGACTTCTTCAAAAGAAAATGGTCCAGTTAGTGCCTCTGATCAGGATGTTGCTATGACTGATGCATCTACTGCCTCAGTTAAGGTATCTACAAGTGCTAGGGGCGCAAGTTTCATTGAAGGGATTTCTAAATCATCATATGCAAAACATGCATCTGACATCAAAGGTTCCTCCGTTAAGGTTCTAAATTGCCATGAATCTGCCATTTACATCTTAGCACCTTTGAGATACGCCACCATCTATGGATGTTCAGATACGACAGTAGTTATTGGAGCAGTTGGAAAGTTTATAAATGATATGAAATTACTTAACATTCTATTTCAAAAGATATGGTATTACTTACCCATCATATTCAAGACCATTGTATGTAATGCATATATGGTGTTCGCTATGTTGGATAAGGCTGTGAGAGTAGAGCACTGTGAACGAGTTCATGTGATTGTTGCAGCAAAACGAATATGTATTGCTAACTGCCGTGAATGTGTTTTCTTTTTGGGAGTGAACCAGCAACCTCTTATTGTCGGTGATAACCATAAGTTGCAGGTGGCTCCCTATAATACTTTTTACTCCCAGTTGGAAGAACATGTGAATGAAGTTGGAGTTCTTCCCACAGTGAATCGTTGGGATGAACCTATAACATTGGGCATGGTTGATCCCCATGATTCACTATCACATCCAGCAGGTGTCTCTGATGTTCAAGCTGAGTCTGCTTCTAAGGTGGATCCTGATCAGTTCACTAATTTTGTGATTCCTAACTGGCTTGGAGAGTCCATCGGCTCTACGAAATACAATCCGTTCACATTACCCGAGGCATATATGGCATCTCAACAAAGAAATGAAAACAATTTAGGGGAAATAAGGCAACTGTTACGAGAAGCACCTTTAGAAGAAAGTCGTAAACGAGAACTGTCATCAGCGCTTCATGTGTATTTCAGGGACTGGTTATATGCCTCTGGGAACATTCGTCAGCTTTACTATTTACAAGGAGATTAA 1782 0.4416 MTESPTDSRTPPLGPTPATVIHPRRVPFEHGLLPIPRLIFSDPAQTLISLKQKLLELSSNNNRVDSAAISESLQISVEQARLVVETLVSVLPAESESDSVDVHDLVLFLYIQSYKRLLPRTHKDSAAVADVWPSTSAFDGYLSALTPLQLVRSNSKRFMPSQGDEEAHQLSYLQKHLANIVSLLAEPVEGESEESLVLTMDRFEHLGFLFQYGDKGLEGNSLSQSSPFFANSDPNMPAVPAPASQVHDWLLQNIASALERIAERTSSKENGPVSASDQDVAMTDASTASVKVSTSARGASFIEGISKSSYAKHASDIKGSSVKVLNCHESAIYILAPLRYATIYGCSDTTVVIGAVGKFINDMKLLNILFQKIWYYLPIIFKTIVCNAYMVFAMLDKAVRVEHCERVHVIVAAKRICIANCRECVFFLGVNQQPLIVGDNHKLQVAPYNTFYSQLEEHVNEVGVLPTVNRWDEPITLGMVDPHDSLSHPAGVSDVQAESASKVDPDQFTNFVIPNWLGESIGSTKYNPFTLPEAYMASQQRNENNLGEIRQLLREAPLEESRKRELSSALHVYFRDWLYASGNIRQLYYLQGD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02435 593 ProSiteProfiles C-CAP/cofactor C-like domain profile. 288 464 IPR017901 -
Vifa5g02435 593 SMART carp 404 438 IPR006599 -
Vifa5g02435 593 SMART carp 327 363 IPR006599 -
Vifa5g02435 593 Gene3D - 299 488 IPR016098 -
Vifa5g02435 593 MobiDBLite consensus disorder prediction 1 20 - -
Vifa5g02435 593 Pfam Tubulin binding cofactor C 388 473 IPR012945 -
Vifa5g02435 593 Pfam Tubulin binding cofactor C 319 360 IPR012945 -
Vifa5g02435 593 PANTHER UNCHARACTERIZED 18 361 IPR039589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02435 Vifa-Chr5 805738694 805747949 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02435 K16810 - gmx:100819271 914.835