Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02412 ATGGAAAAGCCTTCACCAGTCTTCATCTTCCAAATCATCTTATTCCTTCTCACCCAATCACTCCTTGCCACATCACACTCTCCAAATCCCACTCCCGTAACCTTCTCCGTCACCGAATTCGGAGCAACCGGAGACGGCGTCCACTACGACACCTTATCAATCCAGTCCACCATCGATTCATGTCCATCCACTCTCCCCTGCCGCGTCACCTTCCCATCCCCGGGAAAGTACCTAACAGCAACCATATTCCTAAGATCCGGCGTGATCCTGAACGTGGAGACAGGCGCCACCATCCTCGGTGGCACGAAACTGGAAGACTATCCGAAGGAGTCGTCGAGGTGGTACGTGGTATTGGCGGAGAACGCGACGGATGTCGCGATCGAAGGCGGCGGCGTTGTGGATGGACAGGCGGAGAAATTCGTTGTGAGATACAATCCCAGGAAGAATATAATGGTGAGCTGGAATCAAACTGGGAGTTGTTTGGGGGATGAATGCAGACCTAGACTTGTTGGATTTCTTGGATGCAAAAATGTTAGAATCTTCAATGTTACTCTCAATCAACCTGCTTATTGGTGCTTACACTTGGTGCGGAGTGAAAACATATCCATTCATGATATTGCAATTTATGGAGACTTGAATATACCAAACAACGATGGAATTGACATTGAGGACTCAAATAACACGGTAATCACTCGATGTCACATTGACACAGGAGATGATGCAATCTGTCCAAAGTCATCCACTGGCCCTGTTTACAATTTAACAGTCACAGATTCTTGGATTCGATCCAAATCTTCTGCAATCAAACTAGGCAGTGCTAGTTGGTTTGAATTCAAGCATTTTGTTTTTGACAATATCACTATTGTTGATTCTCATAGAGGGCTTGCGTTCCAGATCCGTGATGGAGGAAGTGTTGATGACATTATCTTCTCAAACATAAATATAAGCACAAGATACTATGATCCATTATGGTGGGGTAGAGCCGAGCCTATCTATGTCACAACTTGCCCAAGAGACTCAACCTCAAAAGAGGCTTCAATCTCAAATGTCCGTTTCATCAACATCACAGCAAATTCTGAAAACGGAATCTTCCTCTCTGGTTCAAAGAGAGGATTGTTAAGAAACTTGAGCTTCATCAACATGAACATAACCTACAGAAGGTTCACCGGTTATGCTGGTGGGTTGTTGGACTATAGGCCAGGATGCCAAGAACTGGTTAAACATAAGACAGCTGGGATTATGATGGAACACATTGAAGGTCTTGAGGTTAGAAATGTAGAAATGAGATGGGAAAATAATGAACTTGAGCAGTGGAACAATCCTATGGAGTTTAAACCATCTACTGTGAATAACATCTATTTCAATAATTTTAATTCTATTTTGTATTCAAATAGCAAATCAAGTTGA 1407 0.4343 MEKPSPVFIFQIILFLLTQSLLATSHSPNPTPVTFSVTEFGATGDGVHYDTLSIQSTIDSCPSTLPCRVTFPSPGKYLTATIFLRSGVILNVETGATILGGTKLEDYPKESSRWYVVLAENATDVAIEGGGVVDGQAEKFVVRYNPRKNIMVSWNQTGSCLGDECRPRLVGFLGCKNVRIFNVTLNQPAYWCLHLVRSENISIHDIAIYGDLNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVYNLTVTDSWIRSKSSAIKLGSASWFEFKHFVFDNITIVDSHRGLAFQIRDGGSVDDIIFSNINISTRYYDPLWWGRAEPIYVTTCPRDSTSKEASISNVRFINITANSENGIFLSGSKRGLLRNLSFINMNITYRRFTGYAGGLLDYRPGCQELVKHKTAGIMMEHIEGLEVRNVEMRWENNELEQWNNPMEFKPSTVNNIYFNNFNSILYSNSKSS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02412 468 SUPERFAMILY Pectin lyase-like 20 392 IPR011050 -
Vifa5g02412 468 Gene3D - 13 392 IPR012334 -
Vifa5g02412 468 SMART pbh1 305 327 IPR006626 -
Vifa5g02412 468 SMART pbh1 225 246 IPR006626 -
Vifa5g02412 468 SMART pbh1 251 272 IPR006626 -
Vifa5g02412 468 SMART pbh1 342 367 IPR006626 -
Vifa5g02412 468 SMART pbh1 198 224 IPR006626 -
Vifa5g02412 468 PANTHER PECTIN LYASE-RELATED 28 435 - -
Vifa5g02412 468 Pfam Glycosyl hydrolases family 28 61 385 IPR000743 GO:0004650|GO:0005975
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02412 19 463 Glycoside Hydrolase AT3G57790 65.939 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02412 - - gmx:100794954 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02412 5 794944949 794947119 Vifa5g02412 5 794944949 794947119 ECH