Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02399 ATGGCTATTGCAGCTGCTGCTGTTGTGGTTCCATTAGGCCTGCTCTTCTTCGCCTCAGGCCTCATCGTTAATCTCATTCAGGCAACATTCTATGTCCTTGTAAGGCCATTTTCAAAGAATTTGTACAGACGGATCAACCGGGTGGTGGCAGAACTGTTGTGGCTGGAACTTATTTGGCTTATTGACTGGTGGGCTGGAGTTAAGGTTCAAATATACACAGATCGTGAAACTTTTCGTTTGATGGGTAAAGAACATGCACTTGTCATATGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTTAGCTCAGCGTTCAGGTTGCCTTGGCAGTACTGTAGCAGTGATGAAGAAATCATCAAAGTTACTACCGGTAATTGGCTGGTCAATGTGGTTTTCTGAGTATCTTTTCCTGGAGAGAAGTTGGGCCAAGGATGAAAACACATTGAAATCAGGTATACAGCGGTTGAGAGATTTTCCTCTTCCTTTTTGGTTGGCTCTCTTTGTAGAAGGAACACGTTTTACAAAGGTTAAATTGTTAGCTGCTCAAGAATATGCTACATCCACTGGATTACCTGTTCCTAGAAACGTGTTGATTCCTAGAACTAAGGGGTTTGTTGCGGCTGTAAGTCATATGCGCTCATTTGTTCCTGCCATTTATGACATAACAGTGGCTGTCCCTAAGAGTTCTCCCGCGCCTACAATGCTAAGACTCTTAAATGGGAAACCTTCTGTGGTACATGTTCATATCAAGCGACATTTGATGAAAGAACTGCCAGAAACAGATGAAGCTGTTGCTCAGTGGTGTAAAGATACATTTGTGGCCAAGGATGTGTTGTTAGACAAACACATAGCTGATGATGCTTTCAGTGATCTAGAGCTGCAGGATACTCGTCGACCAATAAAACCTCTTGCGGTAGCTCTATCTTGGGCTTTTGTGGTTGTCGCAGGCACTGCAAAGTTTCTACAATGCTCTTCGTTGCTATCATCGCGGAAGGGTGTTGCACTTTCAACCTTGGGTTTGGCAGTTGTTACTGGCCTCATGCATGTATTGATTCTATTCACACAGGCAGAGCGTTCTAACCCGGCCAAGGTAGCCCCTGCAAAGCCAAAGAATAAGGAAGAACAACCTGAGGCTACAAATGACAAACAACAGTAG 1164 0.4399 MAIAAAAVVVPLGLLFFASGLIVNLIQATFYVLVRPFSKNLYRRINRVVAELLWLELIWLIDWWAGVKVQIYTDRETFRLMGKEHALVICNHRSDIDWLVGWVLAQRSGCLGSTVAVMKKSSKLLPVIGWSMWFSEYLFLERSWAKDENTLKSGIQRLRDFPLPFWLALFVEGTRFTKVKLLAAQEYATSTGLPVPRNVLIPRTKGFVAAVSHMRSFVPAIYDITVAVPKSSPAPTMLRLLNGKPSVVHVHIKRHLMKELPETDEAVAQWCKDTFVAKDVLLDKHIADDAFSDLELQDTRRPIKPLAVALSWAFVVVAGTAKFLQCSSLLSSRKGVALSTLGLAVVTGLMHVLILFTQAERSNPAKVAPAKPKNKEEQPEATNDKQQ 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02399 387 CDD LPLAT_LCLAT1-like 62 253 - -
Vifa5g02399 387 MobiDBLite consensus disorder prediction 370 387 - -
Vifa5g02399 387 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 9 336 - -
Vifa5g02399 387 SMART plsc_2 86 208 IPR002123 GO:0016746
Vifa5g02399 387 Pfam Acyltransferase 80 228 IPR002123 GO:0016746
Vifa5g02399 387 MobiDBLite consensus disorder prediction 363 387 - -
Vifa5g02399 387 Pfam Acyltransferase C-terminus 239 312 IPR032098 -
Vifa5g02399 387 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 30 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02399 Vifa-Chr5 786345151 786351758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02399 3 386 Miscellaneous Gene Families AT3G57650 71.094 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02399 K13523 - gmx:100792858 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02399 5 786345151 786351758 Vifa5g02399 5 786345151 786351758 ECH