Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02397 ATGAGCATGTCTTCACTGCGTCTGGATTCTCACGCAATATGCACTCCTCAACCCCAACGTCCCTTCACCTTCAAGCACTATCGCTCCACCCGAAACGTCGTCATTTGTTCCGCAAATCCAATCGCGCCGCCTCCCACTAAACTCACCGCCGCCGGTTCTACCGCCGGCCGGATCGAGTCGCTCAGCCAGGTCTCCGGTGTCCTCGGATGTCAGTGGGGCGATGAGGGGAAGGGAAAGCTGGTTGACATCTTAGCTCAGCACTTTGAAATCGTTGCTCGTTGTCAGGGTGGAGCTAATGCTGGGCATACCATTTATAATGCGGAGGGGAAAAAGTTTGCCCTCCATCTCGTTCCTTCTGGTATCCTTAATGAAGAAACACTGTGTGTTATCGGTAATGGTGTTGTCGTACATCTGCCGGGGTTGTTTGAAGAAATTGACAACCTTGAGTCAAATGGGGTCTCGTGCAAAGGAAGGATATTGATTTCGGATCGGGCCCACCTATTGTTCGATTTCCACCAAACTGTGGATGGGCTGAGGGAAGTTGAGTTATCTAAGTCTTTCATTGGCACCACCAAGAGAGGCATTGGACCGTGCTACGCCAGCAAAGCCAACCGCAATGGGATTAGAGTTGGTGATTTGCGGTACATGGAAACTTTGCCTCAGAAGCTTGATCTTTTGTTATCAGATGCAGCATTGAGGTTCAAAGATTTTAAGTATGGTCCGGACGTGCTCAGGGAAGAAGTTGAGAAGTACAAGAGATATGCTGAAAGGTTGGAACCATATATTGCTGATACTGTGCATGTTATGAATGAAGCTATAACACAAAAGAAGAAGATCTTGGTTGAAGGAGGACAAGCAACCATGTTGGACATTGATTTCGGTACTTACCCCTTTGTTACTTCTTCTAGCCCATCAGCAGGTGGTATATGCACCGGTCTTGGTATTGCTCCAAGAATAATTGGTGATTTAGTAGGAGTGGTGAAAGCATACACTACAAGAGTTGGTTCCGGTCCTTTTCCAACTGAAATTTTGGGTCCAGGAGGTGATCTCCTCAGGTTTGCTGGGCAGGAGTTTGGCACAACTACTGGCCGTCCTCGACGATGTGGTTGGTTGGATCTAGTTGCCTTAAGATTCTCATGTCAGATCAATGGTTTTTCATCATTGAATCTGACCAAGCTAGATGTTTTGTCTGATCTTGATGAAATTCAATTGGGTGTTTCCTACAAACATCCTGATGGCACCCAGGTCAAATCATTCCCGTCAGATCTTCGTCTTCTTGAGCAATTGAAGGTGGAATATGAAACACTTCCTGGATGGAAGACCGACATTTCATCGATTAGAAACTATTCTGACCTTCCAAGAGCTGCACAGTTGTATGTGGAAAGGATTGAAGAACTCGTCGGCGTCCCTATTCACTACATTGGTGTTGGGCCTGGACGTGATGCTCTCATATACAAATGA 1461 0.4675 MSMSSLRLDSHAICTPQPQRPFTFKHYRSTRNVVICSANPIAPPPTKLTAAGSTAGRIESLSQVSGVLGCQWGDEGKGKLVDILAQHFEIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEETLCVIGNGVVVHLPGLFEEIDNLESNGVSCKGRILISDRAHLLFDFHQTVDGLREVELSKSFIGTTKRGIGPCYASKANRNGIRVGDLRYMETLPQKLDLLLSDAALRFKDFKYGPDVLREEVEKYKRYAERLEPYIADTVHVMNEAITQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRIIGDLVGVVKAYTTRVGSGPFPTEILGPGGDLLRFAGQEFGTTTGRPRRCGWLDLVALRFSCQINGFSSLNLTKLDVLSDLDEIQLGVSYKHPDGTQVKSFPSDLRLLEQLKVEYETLPGWKTDISSIRNYSDLPRAAQLYVERIEELVGVPIHYIGVGPGRDALIYK 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02397 486 ProSitePatterns Adenylosuccinate synthetase GTP-binding site. 71 78 IPR018220 GO:0005525
Vifa5g02397 486 Gene3D Adenylosuccinate Synthetase, subunit A, domain 2 163 261 IPR042110 -
Vifa5g02397 486 NCBIfam adenylosuccinate synthase 67 484 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vifa5g02397 486 Pfam Adenylosuccinate synthetase 67 484 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vifa5g02397 486 Gene3D Adenylosuccinate Synthetase, subunit A, domain 1 67 326 IPR042109 -
Vifa5g02397 486 FunFam Adenylosuccinate synthetase, chloroplastic 163 261 - -
Vifa5g02397 486 SMART adenylsucc_synt 64 485 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vifa5g02397 486 PANTHER ADENYLOSUCCINATE SYNTHETASE 53 486 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vifa5g02397 486 Gene3D Adenylosuccinate Synthetase, subunit A, domain 3 327 486 IPR042111 -
Vifa5g02397 486 Hamap Adenylosuccinate synthetase [purA]. 1 486 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vifa5g02397 486 ProSitePatterns Adenylosuccinate synthetase active site. 194 205 IPR033128 -
Vifa5g02397 486 FunFam Adenylosuccinate synthetase 327 486 - -
Vifa5g02397 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 485 IPR027417 -
Vifa5g02397 486 CDD AdSS 63 485 IPR001114 GO:0000166|GO:0004019|GO:0006164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02397 K01939 - gmx:100792329 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02397 5 785513057 785515752 Vifa5g02397 5 785513057 785515752 ECH