Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02324 ATGCTCCACATTTCAATGGCCAGCGCAGCCCCTAACCGTATCCAACTCGGTGGCGCCACCGACTCAACTCGCCCTCCAAAGTCCACAATCACGCGCAAGAAGAAACCCAACGAGTTGGCATTCAAGGAGACAAAGGATGGTTTTGTGGACTACAACAGAGGACAACACGAGGTATCCACCAAAATCGACGGCCTCCGCAAGGACGATATCCCCGCACACTACCGCCTCCGAGTCGCCGGAGACCGCTTCCAAAAGGATTGGACTGTGTCGGAGGTTGTCGACTCAGTCCTCTCCCTTACCCTCCGCGACGACGTTGAAGGCCTACTCAACCGCTGGATAGGCCGCTTTGCTCGCAAGAATTTCCCTTTCCTCATTAGGGAGTTGACACAGAGAGGTTCAATTGAACACTGTAACTTAGTTTTCAGCTGGATGAAGAACCAGAAGAATTATTGTGCCAGAACAGATATATACAACATGATGATTAGGTTGCATGCTAGGCATAATAGAACGGACCAGGCACGTGGATTGTTTTTCGAGATGCAAAAATGCAGGTGTAAACCTGATGCTGAGTCTTACAGCGCTCTTATTAATGCGCATGGTCGAGCTGGACAATGGCGTTGGGCTATGAATATCATGGACGACATGCTGCGTGCAGCTATTCCACCAAGTCGGTCAACGTACAACAACTTGATTAATGCTTGTGGATCTAGTGGAAATTGGAAAGAAGCACTTAATGTTTGCAAGAAAATGACTGACAATGGAGTTGGACCAGATCTCTTCACTCACAATATTATGTTATCTGCATTTAAAAGTGGGGCTCAGTATTCAAAAGCTTTGTCGTATTTTGAACTAATGAAGGGAACTCACATTCGCCCTGACACAACCACACACAATATTGTTATCCATTGTCTAGTGAAACTTCAACAATATGACAAAGCCATTGATATTTTTAATTCCATGAGGGAAAAGAAGTCAGAGTGTCACCCTGACGTTGTAACATACAATAGTATCATTCATTTGTATTCTAGGTGTGGGAAAACTGAAAATTGTGAGGCTGCATTCAGTATGATGCTTGCAGAAGGGCTGAAACCAAGCATAGTCTCATACAATGCTCTACTAGGTGCATATGCTGCTCGTGGGATGGAAAATGAGGCCCTTTCGGTTTTTAATAAGATAAAACAAAATGGTTTCCGCCCAGATATTGTATCTTATACATCTCTGCTTAATGCTTATGGAAGATCACGAAAGCCCCAAAAAGCAAGGGAAATATTCAAAATGATAAAGAGAAACAACTTGAAGCCAAACATTGTCAGTTACAATGCACTGATTGATGCCTATGGGTCGAATGGTTTGCTTGAAGATGCAATAGAAATCTTGCGGGAAATGGAACAAGATAAGATTCATCCAAATGTGGTCTCAATATGCACGCTCTTGGCTGCCTGTGGGCGCTGCTGTCAGAAGGTGAAGATAGATACTGTGCTATCAGCAGCTCAGATGCGAGGCATTAAATTGAACACAGTTGCATATAATTCAGCTATAGGAAGCTATATTAATACGGGGGAATATGACAAAGCTATAGACTTGTATAAATCCATGAGTAAGAAAAAAATAAAATCTGATTCTGTTACTTACACTATCTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGGGGAGGCCTTATCTTTTATGGAAGAAATGATGCATCTCAAACTTCCTATGTCCAAAGAGGTCTACTCATCTGTCATATGTGCCTATAGCAAACAAGGGCAAATCATTGAAGCAGAGTCTACATTCAACTTGATGAAATCATCTGGTTGTAATCCAGATGTGGTTACATATACTGCAATGCTTGATGCCTTCAATGCAGCTGAGAAGTGGGAGAAAGCATATGCACTCTTCGAAGAAATGGAAGCAAATGGCACCAAGCTGGATACCATCGCATGTGCAGCTCTAATGAATGCTTTTAACAAAGGTGGTCAACCAAGAAGGGTCCTTAGTCTTGCACAAACTATGAGAGAAAAAGAGATTCCTTTAAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCTTATTACATGATTGGAAGACAGCTATTGATGTGATCAAGTACATGGAGCCTTCACTTCCCATAATTTCATCTGGGTGTTTGAATCTGTTACTGAATTCCTTAGGAAAAAGTGGAAAGATAGAAACTATGTTAAAACTATTCTTCAAAATGTTGACATCGGGTGCTGATGTTAACTTCAATACTTATTCTATTTTATTGAAAAACCTTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGGTACTACAATGGATGGAGGATGCAGGAATTCGTCCTTCAAATGAAATGTACCGCGATATATCCTCCTTTTCACAAAAACACTGTGGGGCTGAAAATGCTGCTGTCATAAAAGAAAGGCTTGAATCCTTGCAAAGAAAACCTGCAGATCAAACTGCAAGCGAACCTTGTGAATCTCATCTTAGTTGA 2502 0.4145 MLHISMASAAPNRIQLGGATDSTRPPKSTITRKKKPNELAFKETKDGFVDYNRGQHEVSTKIDGLRKDDIPAHYRLRVAGDRFQKDWTVSEVVDSVLSLTLRDDVEGLLNRWIGRFARKNFPFLIRELTQRGSIEHCNLVFSWMKNQKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAESYSALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLFTHNIMLSAFKSGAQYSKALSYFELMKGTHIRPDTTTHNIVIHCLVKLQQYDKAIDIFNSMREKKSECHPDVVTYNSIIHLYSRCGKTENCEAAFSMMLAEGLKPSIVSYNALLGAYAARGMENEALSVFNKIKQNGFRPDIVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCCQKVKIDTVLSAAQMRGIKLNTVAYNSAIGSYINTGEYDKAIDLYKSMSKKKIKSDSVTYTILISGCCKMSKYGEALSFMEEMMHLKLPMSKEVYSSVICAYSKQGQIIEAESTFNLMKSSGCNPDVVTYTAMLDAFNAAEKWEKAYALFEEMEANGTKLDTIACAALMNAFNKGGQPRRVLSLAQTMREKEIPLSDTIFFEMVSACSLLHDWKTAIDVIKYMEPSLPIISSGCLNLLLNSLGKSGKIETMLKLFFKMLTSGADVNFNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIRPSNEMYRDISSFSQKHCGAENAAVIKERLESLQRKPADQTASEPCESHLS 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Vifa5g02324 833 SUPERFAMILY TPR-like 515 602 IPR011990 GO:0005515
Vifa5g02324 833 FunFam Pentatricopeptide repeat-containing protein At2g41720 658 833 - -
Vifa5g02324 833 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 115 486 - -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 542 572 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 437 471 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 367 401 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 226 258 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 296 325 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 402 436 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 260 294 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 578 611 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 332 365 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 507 540 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 612 645 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 156 189 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 720 746 IPR002885 -
Vifa5g02324 833 NCBIfam pentatricopeptide repeat 191 223 IPR002885 -
Vifa5g02324 833 Pfam PPR repeat family 226 269 IPR002885 -
Vifa5g02324 833 Pfam PPR repeat family 505 553 IPR002885 -
Vifa5g02324 833 Pfam PPR repeat family 578 621 IPR002885 -
Vifa5g02324 833 Pfam PPR repeat family 156 199 IPR002885 -
Vifa5g02324 833 MobiDBLite consensus disorder prediction 13 33 - -
Vifa5g02324 833 Gene3D Tetratricopeptide repeat domain 98 236 IPR011990 GO:0005515
Vifa5g02324 833 FunFam Pentatricopeptide repeat-containing protein At2g41720 91 251 - -
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Vifa5g02324 833 Pfam PPR repeat 296 323 IPR002885 -
Vifa5g02324 833 Gene3D Tetratricopeptide repeat domain 393 465 IPR011990 GO:0005515
Vifa5g02324 833 Gene3D Tetratricopeptide repeat domain 247 322 IPR011990 GO:0005515
Vifa5g02324 833 Gene3D Tetratricopeptide repeat domain 323 392 IPR011990 GO:0005515
Vifa5g02324 833 Gene3D Tetratricopeptide repeat domain 466 571 IPR011990 GO:0005515
Vifa5g02324 833 Gene3D Tetratricopeptide repeat domain 572 643 IPR011990 GO:0005515
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Vifa5g02324 833 Pfam Pentatricopeptide repeat domain 451 482 IPR002885 -
Vifa5g02324 833 Pfam Pentatricopeptide repeat domain 387 449 IPR002885 -
Vifa5g02324 833 Pfam Pentatricopeptide repeat domain 738 786 IPR002885 -
Vifa5g02324 833 Pfam Pentatricopeptide repeat domain 633 677 IPR002885 -
Vifa5g02324 833 Pfam Pentatricopeptide repeat domain 327 377 IPR002885 -
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vifa5g02324 833 FunFam Os07g0213300 protein 270 384 - -
Vifa5g02324 833 SUPERFAMILY HCP-like 226 437 - -
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Vifa5g02324 833 FunFam Predicted protein 398 513 - -
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 750 784 IPR002885 -
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Vifa5g02324 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 540 574 IPR002885 -
Vifa5g02324 833 Gene3D Tetratricopeptide repeat domain 656 831 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02324 437 814 Glycosyltransferase AT1G05670 22.955 2.89e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02324 - - gmx:100814643 1382.47