Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02280 ATGATATCCATTTCAGATTTCACCCTTCACCGTTCACTCTACACTAACTCCTTCAATTTTGCACTCTCTCCAGGAACCATGTCTCAATTGCTGTCATCTTCTTGCTCCTTGACTTTCTCCTCTACAAATAAACCTTATAACCAATGCTCAGCGTCATTTTCTAATTTTAACAGAGTTGGTTGTGATTTTTCGAGAACTCGATTTAGACGTCTTTACTCGCAACAGAAGCCAAGCAAACGTTTCACATTTGTAAATGCTGCTACTGTTTCAACCGGCCAGGAAACTCCGGTTAAAACTAGTTCCGGGGAGCCTTTTAAACCGAAGCGAGTCATGGTCATTGGCGGAGATGGATACTGTGGTTGGGCAACTGCCCTCCATCTTTCTAACAAAGGTTACGATGTTGCCATTGTTGATAACCTTGTTCGACGCCTTTTCGATCACCAGCTTGGTTTGGATTCTTTGACGCCGATTTCCTCTATTCAGGATCGTCTTCAGTGTTGGAAATCGATTACTGGGAAAAGTATTGAGCTATTTGTTGGTGATATATGTGAGTTTGAGTTCTTATCCGAAACGTTCAGGTCGTATGAGCCTGATGCTGTTGTTCATTTCGGGGAACAGCGGTCTGCTCCTTACTCTATGATAGATCGGTCGAGAGCTGTGTATACGCAGCAAAACAATGTTGTCGGGACACTGAATGTGCTTTTCGCTATAAAAGAGTATAAAGAGGATTGCCATCTAGTTAAACTTGGGACAATGGGTGAATACGGGACTCCGAATATTGATATTGAGGAAGGTTATATTACCATTACTCACAATGGGAGAACCGACACTCTGCCGTATCCGAAGCAAGCTAGCTCGTTCTATCATTTAAGCAAGGTGCATGATTCACATAACATAGCTTTCACTTGTAAAGCTTGGGGCATTCGGGCAACGGATCTGAATCAAGGAGTAGTATACGGAGTAAAAACGGACGAGACTGCAATGCATGAAGAGCTGTGTAATAGGTTTGATTACGATGCAATATTTGGAACTGCATTGAATCGGTTTTGTGTTCAGGCTGCTGTTGGTCATCCACTCACTGTATATGGTAAAGGAGGCCAGACCAGGGCCTTCCTTGACATAAGAGATACAGTCCAGTGTGTTGAGCTTGCAATTGCGAACCCGGCCAACCCTGGAGAATTTCGGGTCTTCAATCAATTTACTGAACAATTTAAAGTGACTGAACTAGCCAACATTGTTACGAAAGCTGGCGAGAAGCTAGGCCTTGATGTGAAAACCATATCAGTTCCTAACCCAAGAGTGGAGTTAGAAGAGCATTATTACAATTGCAAAAACACTAAACTAGTTGATCTTGGACTCAGACCACATTTCCTTTCGGATTCCCTCATTGATTCACTTCTTAACTTTGCGGTTCAGTACAAAGACCGCGTTGACACGAAGCAAATTATGCCTGGTGTTTCTTGGAGAAAGGTTGGGGTCAAAACAAAAACCATTTAA 1497 0.4275 MISISDFTLHRSLYTNSFNFALSPGTMSQLLSSSCSLTFSSTNKPYNQCSASFSNFNRVGCDFSRTRFRRLYSQQKPSKRFTFVNAATVSTGQETPVKTSSGEPFKPKRVMVIGGDGYCGWATALHLSNKGYDVAIVDNLVRRLFDHQLGLDSLTPISSIQDRLQCWKSITGKSIELFVGDICEFEFLSETFRSYEPDAVVHFGEQRSAPYSMIDRSRAVYTQQNNVVGTLNVLFAIKEYKEDCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETAMHEELCNRFDYDAIFGTALNRFCVQAAVGHPLTVYGKGGQTRAFLDIRDTVQCVELAIANPANPGEFRVFNQFTEQFKVTELANIVTKAGEKLGLDVKTISVPNPRVELEEHYYNCKNTKLVDLGLRPHFLSDSLIDSLLNFAVQYKDRVDTKQIMPGVSWRKVGVKTKTI 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02280 498 CDD SQD1_like_SDR_e 109 489 - -
Vifa5g02280 498 Gene3D - 109 400 - -
Vifa5g02280 498 Gene3D - 316 477 - -
Vifa5g02280 498 Pfam NAD dependent epimerase/dehydratase family 110 398 IPR001509 -
Vifa5g02280 498 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 108 477 IPR036291 -
Vifa5g02280 498 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 106 488 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02280 27 498 Acyl Lipid Metabolism Gene Families AT4G33030 74.792 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02280 K06118 - gmx:100805019 826.624