Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02278 ATGAAGTTCATTAACCCTAAAAATCTCTCTCCCAAACACCTTTTCCGTTCTAAGAAGGAAAAATCCTCCGTATCAAGATCCGACCCGCCTTCTTTCGGGTCAGCTTCTTCCTCCGACGAATCCACTCATAAAGCCGTCACTGGCGGCTCTCAAACACCTACCAGCGTCCTTCCGGAAGAAGCGTCATCCAGCTCGTGGTCCGACGTCACCGTCGAAGTCCAATTGGAGCTCGCTCAGGCGTTCCAGTTAATCGACCGGGACAACGACGGAGTCGTTTCGCGGCAAGAACTCGAAGCGGTCCTCACACGCCTAGGAGGGCAGGCGCGTCCACCTACCTCCGAGGAGATTGAGATGATGTTAAGCGAAGTTGATAGCGATGGTAGGGGATGCATAAGCGTGGAATCGATCATGAACCGGATCGGATCCGGTCCCGTTTCGGGTAACTCGAACCCGGAGGAGGAACTGAGGGAAGCGTTTGAGGTATTTGATACGGATCGGGATGGGAGAATCTCGGCGGAGGAGTTGTTGAGGGTTTTTAGAGCGATTGGGGATGAACGGTGTACGTTAGAGGAGTGCCGGCGTATGATAGCGGGTGTTGATAAAAACAGAGACGGGTTTGTCTGTTTCGAGGAGTTTTCGTGTATGATGGAGATGCAACGGTGA 663 0.5279 MKFINPKNLSPKHLFRSKKEKSSVSRSDPPSFGSASSSDESTHKAVTGGSQTPTSVLPEEASSSSWSDVTVEVQLELAQAFQLIDRDNDGVVSRQELEAVLTRLGGQARPPTSEEIEMMLSEVDSDGRGCISVESIMNRIGSGPVSGNSNPEEELREAFEVFDTDRDGRISAEELLRVFRAIGDERCTLEECRRMIAGVDKNRDGFVCFEEFSCMMEMQR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02278 220 Gene3D - 51 140 - -
Vifa5g02278 220 Gene3D - 145 220 - -
Vifa5g02278 220 ProSitePatterns EF-hand calcium-binding domain. 200 212 IPR018247 -
Vifa5g02278 220 FunFam calmodulin-like protein 3 148 220 - -
Vifa5g02278 220 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 154 218 - -
Vifa5g02278 220 MobiDBLite consensus disorder prediction 1 64 - -
Vifa5g02278 220 CDD EFh 154 216 IPR002048 GO:0005509
Vifa5g02278 220 SUPERFAMILY EF-hand 61 216 IPR011992 -
Vifa5g02278 220 ProSiteProfiles EF-hand calcium-binding domain profile. 187 220 IPR002048 GO:0005509
Vifa5g02278 220 CDD EFh 76 134 IPR002048 GO:0005509
Vifa5g02278 220 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
Vifa5g02278 220 MobiDBLite consensus disorder prediction 26 64 - -
Vifa5g02278 220 FunFam Calmodulin, putative 72 144 - -
Vifa5g02278 220 Pfam EF-hand domain pair 76 134 IPR002048 GO:0005509
Vifa5g02278 220 Pfam EF-hand domain pair 152 216 IPR002048 GO:0005509
Vifa5g02278 220 ProSitePatterns EF-hand calcium-binding domain. 163 175 IPR018247 -
Vifa5g02278 220 ProSitePatterns EF-hand calcium-binding domain. 85 97 IPR018247 -
Vifa5g02278 220 ProSiteProfiles EF-hand calcium-binding domain profile. 150 185 IPR002048 GO:0005509
Vifa5g02278 220 SMART efh_1 115 143 IPR002048 GO:0005509
Vifa5g02278 220 SMART efh_1 76 104 IPR002048 GO:0005509
Vifa5g02278 220 SMART efh_1 191 219 IPR002048 GO:0005509
Vifa5g02278 220 SMART efh_1 154 182 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02278 Vifa-Chr5 749969200 749969862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02278 8 220 EF-hand Containing Proteins AT3G10190 50.455 6.19e-60 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02278 K13448 - gmx:100815559 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02278 5 749969200 749969862 Vifa5g02278 5 749969200 749969862 ECH