Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02271 ATGGGGATGAGGCTACAGCTGCACCATCTCACGGCGGCCATGGTGGCGGTTGTCGTCACTGCATGGTTAGCATACAATCCCGGCGTCCGACCATCTAATGATATACCTAAAACATCAGTAGCCGTTGGAGTTTCCGATGCATACAAGATGGTTCTGATTGAAAATGGTGGTGCCGTTGGACCAGAAAGTTTCGCTTTCGACCCTCACGGGAAAGGACCATACGCAGGAGTTTCTGATGGCAGAATTATGAAATGGGACATCCTTGAAAATCATTGGGTGGACTTTGCAGTCACTTCTTCAAACAGAGTTGATGAGTGTAGAGGATCATATAAGGAGCATGCCAAGAATGAACACATATGTGGGCGTCCACTTGGGCTTTGCTTTAACATGGCATCAGGCCAACTTTATGTTGCCGATGCATACATGGGCCTAGTTGTTATTGAGCCCAATGGTGGCACTGCTACAAAACTCATATCACATGCAGTACAAGATCAACCATTAGGTTTTACAAATGGTTTAGATATTGATCAAAACACTGGAGCAGTTTACTTTACCACTAGCAGCTCTAAGTATGAAAGAAGGAATTACGTGTCTCTGATTCTAAGTGGAGACAAATCAGGGAGAGTAATAAAATATGAACCAAAAAGCAAAGAAATAACGGTTCTTGTAAACAATCTCACATTTCCAAATGGAGTAGCGCTAAGCAAAGATGGTAACTATATTCTAATAGTAGAAACTACAAAATGTAGAATACTAAGATATTGGTTAGAAACACCAAAAGCTGGAACATTAGAAGTCTTTGCCAATCTACCTGGTTTTGGAGACAACATAAAACGGAGTCCAAGAGGTGGATTTTGGGTTGGAATTCACTCAAAAAGAGAAACATTTATCAAATGGATTCTATCATATCCATGGATAGGAAAAGGGTTGGTTATGCTTCCTTTGGACATGACAAAAATGTATTCATATTTGGCTAAGATAAAAGGGAGTAGTGGAATGGCAATAAGGCTAAGTGATGAGGGTGATGTTTTGGAAGTTGTTGAAGATGATAGAAGTGGAAATAGAAAGTCTATTAGTGAAGTTGAGGAAAGAGATGGAATATTATGGTTAGGATCTGTTGATGCATCTTTTGCTATTAAGTATAATATTCCAATGGCACAAGAATAA 1167 0.3993 MGMRLQLHHLTAAMVAVVVTAWLAYNPGVRPSNDIPKTSVAVGVSDAYKMVLIENGGAVGPESFAFDPHGKGPYAGVSDGRIMKWDILENHWVDFAVTSSNRVDECRGSYKEHAKNEHICGRPLGLCFNMASGQLYVADAYMGLVVIEPNGGTATKLISHAVQDQPLGFTNGLDIDQNTGAVYFTTSSSKYERRNYVSLILSGDKSGRVIKYEPKSKEITVLVNNLTFPNGVALSKDGNYILIVETTKCRILRYWLETPKAGTLEVFANLPGFGDNIKRSPRGGFWVGIHSKRETFIKWILSYPWIGKGLVMLPLDMTKMYSYLAKIKGSSGMAIRLSDEGDVLEVVEDDRSGNRKSISEVEERDGILWLGSVDASFAIKYNIPMAQE 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02271 388 Pfam Strictosidine synthase 171 258 IPR018119 GO:0009058|GO:0016844
Vifa5g02271 388 SUPERFAMILY Calcium-dependent phosphotriesterase 54 376 - -
Vifa5g02271 388 Gene3D - 42 386 IPR011042 -
Vifa5g02271 388 FunFam Protein STRICTOSIDINE SYNTHASE-LIKE 13 46 384 - -
Vifa5g02271 388 PANTHER STRICTOSIDINE SYNTHASE-RELATED 49 374 - -
Vifa5g02271 388 Pfam Strictosidine synthase-like, N-terminal 50 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02271 Vifa-Chr5 747527173 747534280 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02271 - - mtr:11416127 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02271 5 747527173 747534280 Vifa5g02271 5 747527173 747534280 ECH