Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02264 ATGATGGCAGAACAAAACGGAGTACACAACCTGTCTCTTGAAACTGCAACCCCTATGGAGATTGAGAACGGAGACACACCACAAGTACAACCTCAAGAACAGCAACAACCCAAGTGTCTAATCACCCAGGGCGACAATGGAAGCATTGAGAGTCACCGTTACTACCTCTCTCGCAGAACAACACTCGAGATGCTCAAAGACAGAGGCTACTCTATTCCGTCATCCGAAATCGAGCTCTCGCTCGAAGAATTTCGGCAAGTTCATGGTCAATCTCCGGATGTTGATCGACTCCGGTTTACAGCTAGTCATAGCACTGATCCCTCTAAAAGGTTTTTGGTGATTTTTAGTGGGCCAGGGAAGGTGAAACTGAATGTGATCAGGAACATTGTTGGACAGATTGTGAATAGAGACGCTCTCAGTGGTTTGATTTTGATTGTGCAAAATCAGATTACTAACCAGGCTTTGAAAGTGGTTCATACTCTATCTTTCAAAGTTGAAATTTTCCAGATCACAGACTTGCTTGTTAATATTACAAAGCATGTGTTGAAGCCAAAGCATCAGATTCTGACTGATAAGCAGAAAAGGAATCTCCTGAAGAAGTACGATATACAAGAAAAGCAGCTTCCTCGGATGCTACAGACAGATGCAATTGCTCGATACTATGGACTTCAGAGGGGGCAGGTAGTTAAAGTTACCTACACCGGTGAAATCACCCAGATGCACGTTACCTATCGATGCGTTTGGTGA 747 0.4391 MMAEQNGVHNLSLETATPMEIENGDTPQVQPQEQQQPKCLITQGDNGSIESHRYYLSRRTTLEMLKDRGYSIPSSEIELSLEEFRQVHGQSPDVDRLRFTASHSTDPSKRFLVIFSGPGKVKLNVIRNIVGQIVNRDALSGLILIVQNQITNQALKVVHTLSFKVEIFQITDLLVNITKHVLKPKHQILTDKQKRNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02264 248 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC1 173 248 - -
Vifa5g02264 248 Pfam RNA polymerase Rpb5, C-terminal domain 175 247 IPR000783 GO:0003677|GO:0003899|GO:0006351
Vifa5g02264 248 SUPERFAMILY RPB5-like RNA polymerase subunit 173 248 IPR035913 -
Vifa5g02264 248 PIRSF RPB5 44 248 IPR014381 GO:0003899
Vifa5g02264 248 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 49 248 IPR014381 GO:0003899
Vifa5g02264 248 Gene3D - 46 172 IPR036710 GO:0003677|GO:0003899|GO:0006351
Vifa5g02264 248 Gene3D - 173 248 IPR035913 -
Vifa5g02264 248 Pfam RNA polymerase Rpb5, N-terminal domain 50 132 IPR005571 GO:0003677|GO:0003899|GO:0006351
Vifa5g02264 248 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 48 176 IPR036710 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02264 Vifa-Chr5 746976474 746979965 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02264 K03013 - gmx:100306033 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02264 5 746976474 746979965 Vifa5g02264 5 746976474 746979965 ECH