Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02252 ATGATAACTATGGATACTTTGCTCAAAACACCAAATAAGCTTCAATTTTTGCAACCACTTCATGGTTATTCAGAAAAATTGGCTAATTGTTCAGCTTCTTTTAAGTTGCAAAACCATGAAGTTAGATTTGGTGGTTCAAAGAAAAAACCTATTTTGAGGGCTAGTAGTAGTGCCCTTTTGGAGCTTGTTCCTGAATTTAAGAAAGAGAATTTGGATTTTGAACTTCCTTTGTTTGATTCAACAAAGGGAACTGTTGTGGATCTTGCTGTTGTGGGAGGTGGTCCTGCGGGGCTTGCGGTAGCGCAGCAGGTTTCTGAAGCCGGGCTTTCGGTTTGTGCTATTGATCCGAATCCTAGATTGATTTGGCCGAATATTTATGGTGTTTGGGTGGATGAATTCGAAGCGATGGATTTACTTGATTGCCTTGATAAAACTTGGTCTGGTGCGGTTGTTTATATCGATAATAAAACTAAAAAGGATTTACATAGACCTTATGGTAGGGTGAATAGGAAACTTTTGAAGTCGAAGATGTTACAAAATGTATATCGAATGGCTACTGTGGTTCTTGATGCTACTGGCTTTTCGAGATGCCTTGTAGAGTACGATAAACCGTATAATCCAGGTTACCAAGTTGCGTATGGTATTTTGGCTGAGGTTGATGAACATCCGTTTGATGTTGATAAAATGCTTTTTATGGACTGGAGAGATTCGCATCTGGACGATAACACGGAGCTCAAGGAGAGAAATAGTAAAATACCTACCTTTCTATATGCAATGCCGTTTTCGTCGACCAAGATATTTCTCGAAGAAACGTCTCTTGTTGCACGCCCTGGGTTAAGGATGGAAGATATACAAGAAAGAATGGTTGCTAGGTTGAAACATTTGGGTATCAATGTGAAAAGCATTGAAGAAGATGAACATTGTGTGATTCCCATGGGCGGCCCTCTCCCGGTTCTCCCTCAACGAGTTGTTGGGATTGGTGGTACGGCTGGGATGGTGCATCCTTCAACTGGTTACATGGTAGCAAAGACCCTAGCTGCAGCTCCTATTGTAGCTAATGCTATTGTTCAGTATCTTGGTTCTGATAGAGGTCTTTTGGGAAATGAAGTATCTGCACAAGTATGGAAAGACTTATGGCCGATTCAAAAAAGACGACAACGGAGTTTTTCTGTTTTGGTATGGACATCTTACTCAAGCTTGATTTACCGGGAACAAGGAGATTTTTCGATGCGTTTTTTAATCTGGAAACCTCATTATTGGCATGGATTCTTATCGTCGAGACTGTATCTTCCTGAGCTGCTACTTTTTGGACTGTCTCTATTTTCTTATGCTTCAAATACATCTAGGGTAGAGATCATGGCAAAGGGAACTCTTCCTTTAGTAAATATGGTCAACAACTTGATAAAAGATAAAGAATAA 1419 0.4017 MITMDTLLKTPNKLQFLQPLHGYSEKLANCSASFKLQNHEVRFGGSKKKPILRASSSALLELVPEFKKENLDFELPLFDSTKGTVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNIYGVWVDEFEAMDLLDCLDKTWSGAVVYIDNKTKKDLHRPYGRVNRKLLKSKMLQNVYRMATVVLDATGFSRCLVEYDKPYNPGYQVAYGILAEVDEHPFDVDKMLFMDWRDSHLDDNTELKERNSKIPTFLYAMPFSSTKIFLEETSLVARPGLRMEDIQERMVARLKHLGINVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVAKTLAAAPIVANAIVQYLGSDRGLLGNEVSAQVWKDLWPIQKRRQRSFSVLVWTSYSSLIYREQGDFSMRFLIWKPHYWHGFLSSRLYLPELLLFGLSLFSYASNTSRVEIMAKGTLPLVNMVNNLIKDKE 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02252 472 PANTHER - 181 467 - -
Vifa5g02252 472 SUPERFAMILY FAD/NAD(P)-binding domain 86 421 IPR036188 -
Vifa5g02252 472 Gene3D - 84 206 IPR036188 -
Vifa5g02252 472 NCBIfam lycopene cyclase family protein 185 452 IPR010108 GO:0016117|GO:0016705
Vifa5g02252 472 Pfam Lycopene cyclase protein 87 182 - -
Vifa5g02252 472 Pfam Lycopene cyclase protein 185 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02252 Vifa-Chr5 746316959 746318466 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02252 K06443 - gmx:100783830 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02252 5 746316959 746318466 Vifa5g02252 5 746316959 746318466 ECH