Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02242 ATGCTTCGCTCAGAAGCTCTGGGGTTATTTTATTCTGACCTTCAAAATGATCTTTATAAATCCCCCTTTGCCATTTATCATCGAAGGTATAGCACAAATACTAGTCCCAGATGGCCTCTTGCACAACCAATGAGACTTCTTGGTCATAATGGAGAGATCAACACCATACAGGGGAATTTGAACTGGATGCAGTCACGAGAGCCTTCGTTGAAGTCACCTGTATGGCGAGGTCGTGAAGATGAAATTCGTCCATTTGGAAATCCAAAGGGATCAGACTCAGCAAATCTTGACAGTGCTGCAGAATTATTAATAAGAAGTGGTCGAAGCCCTGAGGAGTCCATGATGATCCTTGTTCCAGAGGCTTACAAGAATCATCCAACACTGACAATTAAATACCCTGAGGCAGTTGACTTCTATGACTATTACAAGGGCCAGATGGAAGCATGGGATGGACCCGCCTTGCTTTTATTCAGTGATGGAAAAACTGTTGGTGCATGCCTTGATCGGAATGGACTTCGACCTGCTAGATATTGGCGAACATCAGACAATATGGTCTATGTTGCTTCTGAGGTTGGTGTTGTACCAATGGATGAATCAAAGGTTATCTTGAAAGGCCGATTAGGTCCAGGCATGATGATAACGGTTGATTTACTTGGTGGTCAGGTCTATGAGAATATGGAGGTTAAAAAACGAGTAGCCTTATCAAACCCATATGGAGACTGGATCAAGGAAAATCTGCGGTCTTTGAAGTCTGGGAATTTCCTTTCATCCTCTGTGATGGAGAATGATGCAGTATTAAGACACCAACAGGCATTTGGGTACTCCAGTGAAGATGTCCAGATGGTGATTGAGAGTATGGCTTCTCAAGGAAAGGAACCTACATTTTGTATGGGAGATGATATTCCATTGGCAGCGTTATCTCAGAAACCTCACATGCTTTTTGATTACTTTAAGCAGCGGTTTGCACAGGTTACAAATCCTGCAATTGATCCACTTCGAGAAGGGTTAGTTATGTCTCTTGAAGTAAATATAGGGAAAAGAAGGAATATATTGGAAATAGGACCAGAGAATGCTTCACAGGTTATATTATCTAGTCCGGTATTGAATGAAGGGGATCTTGAGTCATTGTTGAAAGACTCCCACTTAAAACCACAAGTGTTGCACACATTTTTTGATATAACTAAGGGGATTGATGGTTCCTTGGAGAAAGCATTAACTAAGCTTTGCGACGCTGCAGATGAAGCTGTTAGAAATGGTTCCCAGCTGTTAGTTCTTTCAGACCGATCAGAAGCACTGGAACCAACTCATCCTGCAATTCCAATACTTCTTGCTGTTGGTACTGTTCATCAGCATCTAATCCAGAATGGTCTTCGGATGTCAGCTTCAATTGTAGCGGATACTTCTCAGTGCTTTAGCACTCATCAGTTTGCCTGTTTAGTAGGATATGGTGCAAGTGCTGTGTGTCCATACTTGGCACTGGAGACATGTCGTCAATGGCGTTTGAGTAATAAAACGGTAAATCTGATGAAGAATGGAAAGATGCCAACTGTATCAATTGAACAGGCGCAGAAAAACTACTGCAAGGCTGTAAAAGCAGGTCTTCTTAAAATTCTTTCCAAAATGGGCATCTCATTGCTTTCAAGTTACTGTGGTGCACAGATATTTGAAATCTATGGACTAGGGAAGGAAGTTGTGGATCTTGCATTCAGCGGAAGTGTATCGAAAATTGGTGGATTAACTTTTGACGAGCTAGCTAGAGAAACTTTATCTTTCTGGGTGAAGGCATTCTCTGAAGATACAGCTAAAAGATTGGAAAATTTTGGATTTATACAGTTTAGACCAGGAGGCGAGTATCATGCAAATAATCCAGAGATGTCAAAGTTGCTCCACAAAGCTGTTCGTCAGAAAAGCCAGAATTCCTTTTCAGTTTATCAACAATATTTGGCTAATCGACCTGTGAATGTTCTCCGTGATCTTCTTGAGTTCAAAAGTGATCGTGCCCCCATACCTGTGGGGAGGGTTGAACCTGCTTCATCTATTGTGAAACGGTTTTGCACCGGGGGGATGTCCCTTGGAGCTATATCTAGAGAAACTCATGAAGCAATTGCAATTGCAATGAACAGAATAGGTGGAAAATCAAATTCAGGGGAAGGTGGTGAGGATCCTATTCGCTGGAAACCACTTACTGATGTTGTTGATGGTTACTCTTCGACTCTTCCACATCTTAAAGGTCTTCAAAATGGGGATACTGCTACTAGTGCTATTAAACAGGTTGCTTCAGGAAGGTTTGGTGTCACTCCAACATTCTTGGCAAATGCTGATCAATTAGAAATCAAAATTGCACAAGGTGCAAAGCCTGGTGAAGGTGGACAATTGCCTGGGAAAAAAGTTAGCATGTATATTGCAAGATTGAGAAACTCTAAACCAGGGGTTCCTCTTATATCTCCACCTCCTCATCATGACATTTACTCTATTGAGGATCTTGCTCAGTTGATATTTGATCTTCACCAGGTGAACCCTAGGGCCAAGGTATCTGTGAAACTGGTGGCTGAAGCTGGAATTGGCACTGTTGCATCTGGGGTTGCAAAAGGCAATGCGGACATTATACAGATTTCAGGACATGATGGAGGAACAGGAGCAAGCCCTATAAGTTCCATCAAACATGCAGGAGGTCCTTGGGAACTTGGACTTACGGAATCTCACCAGACACTTGTTGCAAATGGACTTAGAGAAAGGGTTATTCTCAGAGTTGATGGTGGATTTAGAAGTGGAGTTGATGTCATGATGGCAGCAATAATGGGTGCTGATGAATACGGGTTTGGTTCAGTGGCAATGATTGCCACTGGATGTGTTATGGCCCGCATTTGCCACACCAATAATTGTCCAGTTGGTGTTGCCAGTCAGAGGGAAGAGTTGCGTGCACGCTTTCCTGGTGTTCCCGGTGATCTTGTCAACCTCTTTTTATATGTAGCTGAAGAGGTAAGAGGCACTTTAGCACAGCTGGGGTACGAGAAGTTAGATGATATAATTGGCCAAACAGACTTGCTGAGACCAAGAGACATATCTCTTGTGAAAACTCAGCATCTAGATCTGAGTTATATCCTCTCTAGTGTTGGGTTACCTAAATGGAGCAGTACAGAAATCCGGAATCAGGAGCCACATACAAATGGTCCTGTTCTGGAGGATGGTTTGCTAGCAGACGCAGAGATTGCAGATGCCATTGAAAATGAAAAAGCAGTTAGTAAGACCGTAAATATATACAATGTTGATCGTGCTGTCTGTGGTCGTATAGCTGGTGTTATTGCAAAGAAATACGGTGATACTGGTTTTGCTGGTCAGTTGAATATAACATTTACAGGAAGTGCTGGGCAGTCATTTGGATGCTTTCTGACGCCAGGAATGAATATTCGCCTTGTAGGAGAGGCTAATGATTATGTTGGAAAGGGCATGGCTGGAGGAGAATTGGTTGTCACTCCAGTTGACAAGACAGGGTTTCAACCCGAGGATGCAGCTATTGTGGGTAACACTTGCTTGTATGGGGCAACAGGAGGGCAGGTTTTTGTAAGAGGGAAAGCCGGGGAAAGGTTTGCTGTCAGAAACTCACTTGCTGAAGCTGTTGTTGAAGGCACAGGAGATCATTGTTGTGAGTACATGACTGGTGGCTGTGTGGTTATCCTAGGAAAAGTGGGAAGAAATGTAGCTGCTGGAATGACAGGAGGATTGGCTTACATTCTTGATGAGGATAATACCCTCATTCCCAAGATAAACAGAGAAATTGTTAAAATTCAACGAGTAACAGCGCCTGTGGGGCAGATACAGCTGAAGAAACTAATTGAAGCTCATGTTGAAAAAACGGGTAGCAACAAAGGCGATGCCATTTTGAAGGATTGGGACAAGTATTTATCACTATTTTGGCAGTTGGTTCCACCTAGTGAAGAAGATACCCCTGAGGCTAATGCCAAGTATGACATAACTTCTACAGAACAGGTCACTTTGCAGTCTGCTTAG 4008 0.4294 MLRSEALGLFYSDLQNDLYKSPFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSREPSLKSPVWRGREDEIRPFGNPKGSDSANLDSAAELLIRSGRSPEESMMILVPEAYKNHPTLTIKYPEAVDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTSDNMVYVASEVGVVPMDESKVILKGRLGPGMMITVDLLGGQVYENMEVKKRVALSNPYGDWIKENLRSLKSGNFLSSSVMENDAVLRHQQAFGYSSEDVQMVIESMASQGKEPTFCMGDDIPLAALSQKPHMLFDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRRNILEIGPENASQVILSSPVLNEGDLESLLKDSHLKPQVLHTFFDITKGIDGSLEKALTKLCDAADEAVRNGSQLLVLSDRSEALEPTHPAIPILLAVGTVHQHLIQNGLRMSASIVADTSQCFSTHQFACLVGYGASAVCPYLALETCRQWRLSNKTVNLMKNGKMPTVSIEQAQKNYCKAVKAGLLKILSKMGISLLSSYCGAQIFEIYGLGKEVVDLAFSGSVSKIGGLTFDELARETLSFWVKAFSEDTAKRLENFGFIQFRPGGEYHANNPEMSKLLHKAVRQKSQNSFSVYQQYLANRPVNVLRDLLEFKSDRAPIPVGRVEPASSIVKRFCTGGMSLGAISRETHEAIAIAMNRIGGKSNSGEGGEDPIRWKPLTDVVDGYSSTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPRAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTESHQTLVANGLRERVILRVDGGFRSGVDVMMAAIMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNLFLYVAEEVRGTLAQLGYEKLDDIIGQTDLLRPRDISLVKTQHLDLSYILSSVGLPKWSSTEIRNQEPHTNGPVLEDGLLADAEIADAIENEKAVSKTVNIYNVDRAVCGRIAGVIAKKYGDTGFAGQLNITFTGSAGQSFGCFLTPGMNIRLVGEANDYVGKGMAGGELVVTPVDKTGFQPEDAAIVGNTCLYGATGGQVFVRGKAGERFAVRNSLAEAVVEGTGDHCCEYMTGGCVVILGKVGRNVAAGMTGGLAYILDEDNTLIPKINREIVKIQRVTAPVGQIQLKKLIEAHVEKTGSNKGDAILKDWDKYLSLFWQLVPPSEEDTPEANAKYDITSTEQVTLQSA 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02242 1335 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 245 607 - -
Vifa5g02242 1335 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 1 218 IPR017932 -
Vifa5g02242 1335 Pfam GXGXG motif 1085 1267 IPR002489 GO:0016491
Vifa5g02242 1335 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 1 1317 - -
Vifa5g02242 1335 Pfam Glutamine amidotransferases class-II 1 241 IPR017932 -
Vifa5g02242 1335 CDD GltS_FMN 622 1017 IPR002932 GO:0006537|GO:0015930|GO:0016638
Vifa5g02242 1335 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1056 1316 IPR036485 GO:0016491
Vifa5g02242 1335 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 355 IPR029055 -
Vifa5g02242 1335 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 1041 1316 - -
Vifa5g02242 1335 Gene3D Aldolase class I 293 1019 IPR013785 -
Vifa5g02242 1335 Pfam Glutamate synthase central domain 268 560 IPR006982 GO:0006807|GO:0015930
Vifa5g02242 1335 Gene3D Aldolase class I 245 611 IPR013785 -
Vifa5g02242 1335 SUPERFAMILY FMN-linked oxidoreductases 263 1041 - -
Vifa5g02242 1335 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 245 IPR029055 -
Vifa5g02242 1335 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 608 1019 - -
Vifa5g02242 1335 Gene3D - 1041 1316 IPR036485 GO:0016491
Vifa5g02242 1335 CDD gltB_C 1060 1310 IPR002489 GO:0016491
Vifa5g02242 1335 Pfam Conserved region in glutamate synthase 619 1003 IPR002932 GO:0006537|GO:0015930|GO:0016638
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02242 Vifa-Chr5 739341500 739361098 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02242 K00284 - gmx:100809299 2526.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02242 5 739341500 739361098 Vifa5g02242 5 739341500 739361098 ECH