Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02234 ATGGCACCTGTGTTTCTTCGCCGTCTTCCTCTACTTCGCTTCATGGCCTCTCGCAATTTCTTCACGCCCTCTTCCTTCCGTCTTCATTCTTATCCTCATTCATCTTCATCTCTTCCTCTTTCCACTCTCTCTAAACCCAGGAAGAGAATTTCTCTTAGGAAGTTTGCAGTTCCTAGTTTGGTGTCAAATGCAGTCACTCCAAGGGTGTATATGTCTTCGTTATCTGCGGCTGAAGATATTCATAAGACTGAAGGTTCTAAAGCTTATGGTTCTGATCAAATTCAGGTACTTGAAGGCTTGGACCCTGTAAGAAAAAGGCCTGGGATGTATATTGGAAGCACTGGCATGCGTGGGTTGCACCATTTGGTCTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGGTTTGCTTCAAAGATTGCCGTTGTTTTACATGAAGACGATGCAGTGAGCATTACTGATAATGGTCGCGGGATTCCTACTGACATGCATCCAACTACAAAGAAATCTGCCTTAGAGACAGTGTTGACGATCTTGCATGCTGGTGGAAAATTTGGTGGCATCAATAGTGGCTACTCTGTTTCTGGAGGTTTACATGGTGTTGGTTTATCTGTTGTGAATGCCTTGTCTGAGGTACTAGAGGTAACCGTTTGGCGTGAAGGGTTGGAATATACGCAAGCATATTCTCGCGGGAAGCCGGTGACAACTTTGAATTGTGTCATGCTTCCTTTTGAAAGTAAAGACCGTCAAGGAACGCGGATCAAATTTTGGCCTGACAAAGAAGTATTCACCACTGCTATTCAGTTTGAATACAACACAATAGCTGGACGCATTAGGGAGTTGGCTTTCCTTAACCCAGAGCTTACAATTGTGCTTCGGAAAGAAGACAATGATCCAGAAAAGGTCCAATATAATGAGTATTTCTATGCTGGGGGATTGGCCGAATATGTGAAATGGCTTAACACGGATAAGAAAGCTGTTCATGATGTTCTGAGTTTCAGAAGAGAAATAGATGGAATCACAGTTGATGTAGCTTTACAATGGTGTGAAGATGCATATTCCGACACGATACTAGGATATGCTAATAGTATACGGACTGTCGATGGCGGCACCCATATTGATGGCATGAAGGCTTCTTTAACAAGAACACTCAATAGTCTCGGAAAGAAATCAAAAGTTATCAAGGAAAAGGACATTACTTTAAAGTTTGAAGGACAAACAAAGACAAGGTTGGGAAATCCAGAGGTGCGGAAAGTGGTTGACCAATCTATTCAAGAATATCTTACTGAGTATTTGGAACTGCATCCAGATGTTCTTGACGCAGTTCTCTCTAAAGCTCTTAATGCTTTCAAGGCAGCTTTGGCTGCTAAAAGAGCAAGGGAGTTGGTGAGACAAAAGAGTGTATTGAGATCTTCATCTCTTCCGGGCAAACTCGCTGATTGTTCATCATCAAATCCCGAAGACTGTGAAATTTTTATAGTTGAAGGTGATTCAGCTGGGGGAAGTGCTAAGCAAGGTCGTGACAGGCGCTTTCAGGCCATTCTCCCATTGAGGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCAGCAATGAGTGAAGGGAGAGGATTTTAA 1623 0.427 MAPVFLRRLPLLRFMASRNFFTPSSFRLHSYPHSSSSLPLSTLSKPRKRISLRKFAVPSLVSNAVTPRVYMSSLSAAEDIHKTEGSKAYGSDQIQVLEGLDPVRKRPGMYIGSTGMRGLHHLVYEILDNAVDEAQAGFASKIAVVLHEDDAVSITDNGRGIPTDMHPTTKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEVLEVTVWREGLEYTQAYSRGKPVTTLNCVMLPFESKDRQGTRIKFWPDKEVFTTAIQFEYNTIAGRIRELAFLNPELTIVLRKEDNDPEKVQYNEYFYAGGLAEYVKWLNTDKKAVHDVLSFRREIDGITVDVALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLKFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDAVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMSEGRGF 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02234 540 Gene3D - 404 463 IPR014721 -
Vifa5g02234 540 Gene3D - 313 403 IPR014721 -
Vifa5g02234 540 SMART topII5 118 536 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vifa5g02234 540 SUPERFAMILY Type II DNA topoisomerase 468 534 IPR013760 GO:0003918|GO:0005524
Vifa5g02234 540 Gene3D - 86 312 IPR036890 -
Vifa5g02234 540 SUPERFAMILY Ribosomal protein S5 domain 2-like 314 464 IPR020568 -
Vifa5g02234 540 PRINTS DNA topoisomerase II family signature 361 374 - -
Vifa5g02234 540 PRINTS DNA topoisomerase II family signature 153 166 - -
Vifa5g02234 540 PRINTS DNA topoisomerase II family signature 493 507 - -
Vifa5g02234 540 PRINTS DNA topoisomerase II family signature 198 212 - -
Vifa5g02234 540 PRINTS DNA topoisomerase II family signature 118 133 - -
Vifa5g02234 540 Pfam DNA gyrase B 314 401 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vifa5g02234 540 Pfam DNA gyrase B 404 463 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vifa5g02234 540 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 117 263 IPR003594 -
Vifa5g02234 540 CDD HATPase_GyrB-like 119 304 - -
Vifa5g02234 540 PRINTS DNA gyrase subunit B signature 285 298 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vifa5g02234 540 PRINTS DNA gyrase subunit B signature 89 99 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vifa5g02234 540 PRINTS DNA gyrase subunit B signature 270 285 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vifa5g02234 540 PRINTS DNA gyrase subunit B signature 447 467 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vifa5g02234 540 PRINTS DNA gyrase subunit B signature 433 447 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vifa5g02234 540 Gene3D - 464 538 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vifa5g02234 540 Pfam Toprim domain 492 528 IPR006171 -
Vifa5g02234 540 ProSitePatterns DNA topoisomerase II signature. 495 503 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vifa5g02234 540 ProSiteProfiles Toprim domain profile. 491 540 IPR006171 -
Vifa5g02234 540 FunFam DNA gyrase subunit B 86 312 - -
Vifa5g02234 540 SMART HKATPase_4 114 264 IPR003594 -
Vifa5g02234 540 CDD TopoII_Trans_DNA_gyrase 313 447 - -
Vifa5g02234 540 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 82 536 - -
Vifa5g02234 540 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 89 303 IPR036890 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02234 K02470 - gmx:100779534 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02234 5 737859731 737865015 Vifa5g02234 5 737859731 737865015 ECH