Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02230 ATGTGGGCTCTTCGTCGTGCTTCCTTACCACCGCCTCTCAGGAAGGGAGGTTTTAATCTAAGGGTTTCTTGTGTGAATTTAACTCCAACTACTTGTGTTCAAAATGAGGCTGTATTCGCTGACTCTCCTCGAATAATTAACCGTAATGGCGGATTTTCGTCTATTAATAGATGTTATCATTCTGGAAATGCTTCTTTTAAATTTACTCTTGGTAGACGTGAGTTTTCGTCGGAAGCCGGTGCCAGTAACCCGAAAGACGAGGAAGATGATGATTTGGAGGAGGGGTTTTCGGAGTTGGAGACGCCTGTGGGTGAAGAAAGTGAAAAACTGTTGAGTTCTGATACGGAACTGTCTGATGAGAGTGATGAATTGGATATTGAGGAGCCACACAATGAGCTGGAGTTACCGTTATCGCATGACGAGGATGTTATTTCGACGGAGAAGAAGTTGAGTCGGAGAAAGGCTGAGTCGGAACTGTTCAAAGCGATTATGGAGGCTCCCGGTTTGTCTATTCATAAGGTGCTGGATAAGTGGGTTGAAGAAGGGAACGAAATGAGTAGAGAGGAGATATCGCTGGCTATGGTTAATCTTCGGAAGCGTAAGATGTATGGGAGAGCTTTGCAGCTCTCGGAGTGGGTTGAGTTGAAAAAGCATCTTGAATTTGTTGAAAAGGATTATGCTTCCCAACTTGATTTAATTGCCAAATTGCATGGCCTTTATAAGGCAGAAGTTTACATCCAGAGTATTCCAGAATCTTTTAGAGGGGAGATAATGTACCGAACTTTATTGGCTAACTGTGTTATTCAGAACAATTTGAAGAAAGGAGAGGAAATTTTTAATAAAATGAAGGATTTAGAGTTTCCTCTGACAGCATTTGCATGCAATCAGTTGCTAATTCTGTATAAGAGGAATGACAAAAAGAAAATAGCTGATGTTTTATTGCTGATGGAACACGAGAATGTCAAACCTTCTCCTTTGACTTTCAAAATCTTAATAGATGCAAAAGGCCAGTCCAATGATATTGCTGGAATGGAACAAATTGTTGATAAAATGAAGGCTGCGGATATTGAACCGGACATCCAAACAAACGCAGTTTTGGTGCGGCATTACATAACAGCTGGTCTTGTTGATAAAGCTAAAACAATATTGAAGGAAATGGAAGGTGAAAACCTGAAAGAAAATCGATGGGTATGTCGAATTTTGCTTACTCTATATGCAAACTTGGGAATGGCCGATGAAGTGGAAAGAGTTTGGAAGGTTTGCGAGACACGCCCTTGGATTGAGGAGTGTATGTCTGCAATTGAAGCCTGGGGGAAGTTGAAGAAAATTGATGAAGCAGAGGCAGTTTTTGAGATGATGTCAAAAAGATGGAAGCTTTCATCCAAGAACTGCTCAGTACTACTGAAGGTTTATGCAAACCACAACATGCTAGCGAAGGGCAAGGATCTTGTTAAGCGAATGGCAGATATTGGGTGTCGAATAGGTCCGTTGACTTGGGATGCATTAGTGAAACTTTATGTCCAAGCAGGGGAAGTGGAGAAGGCGGATAGTATTCTGCAGAAGGCAATCCAGCAGAGTCAGATGAAGCCAATATTTTCTTCCTATATCATTATTCTGGAGCAGTATGCTAAGAGAGGTGACATCCATAATTCGGAAAAGATTTTCTATAGAATGAAACAAGCTGGTTACGCGGGTCGAATGAGGCAGTACCATGTTCTTATAGAGGCCTACATAAATGCCAAGGTTCCAGCTTATGGAATTAGGGACAGGTTGAAGGCTGATAATATATTTCCCAACAGAACTTTGGCTCACATGTTGACTCAAGTTGATGGATTTAGGAAGAGTCCAGTTTCCGACTTGCTTGATTGA 1869 0.4152 MWALRRASLPPPLRKGGFNLRVSCVNLTPTTCVQNEAVFADSPRIINRNGGFSSINRCYHSGNASFKFTLGRREFSSEAGASNPKDEEDDDLEEGFSELETPVGEESEKLLSSDTELSDESDELDIEEPHNELELPLSHDEDVISTEKKLSRRKAESELFKAIMEAPGLSIHKVLDKWVEEGNEMSREEISLAMVNLRKRKMYGRALQLSEWVELKKHLEFVEKDYASQLDLIAKLHGLYKAEVYIQSIPESFRGEIMYRTLLANCVIQNNLKKGEEIFNKMKDLEFPLTAFACNQLLILYKRNDKKKIADVLLLMEHENVKPSPLTFKILIDAKGQSNDIAGMEQIVDKMKAADIEPDIQTNAVLVRHYITAGLVDKAKTILKEMEGENLKENRWVCRILLTLYANLGMADEVERVWKVCETRPWIEECMSAIEAWGKLKKIDEAEAVFEMMSKRWKLSSKNCSVLLKVYANHNMLAKGKDLVKRMADIGCRIGPLTWDALVKLYVQAGEVEKADSILQKAIQQSQMKPIFSSYIIILEQYAKRGDIHNSEKIFYRMKQAGYAGRMRQYHVLIEAYINAKVPAYGIRDRLKADNIFPNRTLAHMLTQVDGFRKSPVSDLLD 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02230 622 Gene3D Tetratricopeptide repeat domain 255 434 IPR011990 GO:0005515
Vifa5g02230 622 Pfam PPR repeat 534 562 IPR002885 -
Vifa5g02230 622 Pfam PPR repeat 498 521 IPR002885 -
Vifa5g02230 622 Pfam PPR repeat 433 456 IPR002885 -
Vifa5g02230 622 Pfam PPR repeat 465 492 IPR002885 -
Vifa5g02230 622 Pfam Pentacotripeptide-repeat region of PRORP 257 419 IPR033443 -
Vifa5g02230 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 530 IPR002885 -
Vifa5g02230 622 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 431 616 - -
Vifa5g02230 622 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 255 430 - -
Vifa5g02230 622 Gene3D Tetratricopeptide repeat domain 435 620 IPR011990 GO:0005515
Vifa5g02230 622 MobiDBLite consensus disorder prediction 98 140 - -
Vifa5g02230 622 PANTHER OS12G0527900 PROTEIN 77 603 - -
Vifa5g02230 622 MobiDBLite consensus disorder prediction 102 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02230 Vifa-Chr5 737836336 737839396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02230 162 562 EF-hand Containing Proteins AT1G02150 24.396 2.95e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02230 - - tpra:123891250 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02230 5 737836336 737839396 Vifa5g02230 5 737836336 737839396 ECH