Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02227 ATGGATCAAGGAGAACTTGCACGAATTTTTCAAATGTTCGATAAAAACGGAGACGGTCGCATTACAAAAAAAGAACTTAGCGACTCGTTACAAAACCTTGGAATTTGCATCTCGGAAAAAGATTTGATCACAATGATTGAAAAAATCGACGTAAACGGAGATGGATTTGTCGACATTGACGAATTCGGCGAGTTATACCAAACGATAATGGACGATAAAGACGAGGAGGAGGATATCAAAGAAGCGTTCAATGTGTTTGATCAAAACGGAGACGGTTTCATAACGGGCGAAGAATTAAGCGCGGTGTTATCTTCTTTAGGGTTAAAAAATGGAAAAAGTTTAGAAGATTGCAAAAACATGATCAAGAAAGTTGATGTGGATGGTGATGGAATGGTGAATTTTAAAGAATTTAAACAAATGATGAAAGCTGGTGCTTTTGCCGCTGATTCATAG 453 0.3753 MDQGELARIFQMFDKNGDGRITKKELSDSLQNLGICISEKDLITMIEKIDVNGDGFVDIDEFGELYQTIMDDKDEEEDIKEAFNVFDQNGDGFITGEELSAVLSSLGLKNGKSLEDCKNMIKKVDVDGDGMVNFKEFKQMMKAGAFAADS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02227 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 76 142 - -
Vifa5g02227 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Vifa5g02227 150 FunFam Calmodulin-like protein 3 1 70 - -
Vifa5g02227 150 FunFam calmodulin-like protein 3 72 145 - -
Vifa5g02227 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Vifa5g02227 150 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Vifa5g02227 150 CDD EFh 78 142 IPR002048 GO:0005509
Vifa5g02227 150 PRINTS Parvalbumin signature 124 137 - -
Vifa5g02227 150 PRINTS Parvalbumin signature 87 103 - -
Vifa5g02227 150 PRINTS Parvalbumin signature 65 83 - -
Vifa5g02227 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Vifa5g02227 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Vifa5g02227 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Vifa5g02227 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Vifa5g02227 150 Gene3D - 69 148 - -
Vifa5g02227 150 SMART efh_1 5 33 IPR002048 GO:0005509
Vifa5g02227 150 SMART efh_1 41 69 IPR002048 GO:0005509
Vifa5g02227 150 SMART efh_1 78 106 IPR002048 GO:0005509
Vifa5g02227 150 SMART efh_1 116 144 IPR002048 GO:0005509
Vifa5g02227 150 SUPERFAMILY EF-hand 5 141 IPR011992 -
Vifa5g02227 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Vifa5g02227 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Vifa5g02227 150 Gene3D - 2 68 - -
Vifa5g02227 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02227 Vifa-Chr5 737427282 737427734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02227 1 148 EF-hand Containing Proteins AT3G07490 78.378 2.40e-74 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02227 K13448 - gmx:100798114 257.299