Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02224 ATGCTTTATTTTCTTATATCTTTGGTATCCTTTCTTATGATCCTTTCAAAATCATTTACAAATAAACCACTTTCATCAAATGGGACAAAACTTGTTTCAAATGTGTTTTGTGGAAAGCTTTTTAGTTTTCTAGCTTCTAGGATCAAAACAAGAACTAGTTTTCAAGCTTTTAGTTTTATTCAACTTTCTCTTTTCATTCAATCACCAAACAAGAGTTTGGTACTATCTAAATTTGAAGAGAATCAAAGAAAAGTTTCTCTCTTGGATTTGCATGATTTGCCACTAGATTGCATCCTTGGAAAGCTTTCACCAAGTGAATTATGCAATGTGGCAAAAGTTTGTAAATCTCTTAGAAAAAGTTGTAGAAGTGATTATTTATGGGAGAAGCATATGAAGATGAGATGGGGTAAAGTGTTTGGTGATGCTGCTTATAGAGAATGGAAATGTTATGTAGCTTCAAGGAACATAGAGAAGAGATTAAATCAACACAAGAATCAGAAAAACATACTTCATGATTTTCTTCACTTGTTTTGGATTAAATCAAAAGCAGAAAAAGATATGAAGTTAAAGCTAGATGATTCTATTGCTTCTCTTTATCTTTCTCTTGAGAATGGAAATTTTTGGTTCCCTGCTCAAGTTTATAACCGTGAGAATGGTCATGCTGGGTTTATGCTCTCATGTTATGATGCTCAACTTTGCTATGACTCTAGAACTAATACTTTTCAAGCAAGGTATTCACCTCATGGTAGATGGACAATAGAGGAAAACATAAAATGGGAGAGGCTAAGAGTGCCACCTATTGACTCTTGTTCACATGTTCTTCATATTTCTGATTGCTTAAATGATTTAAAGCCCGGTGATCATGTTGAAATCCAATGGAGAAGAAATAAGGAGTTCCCTTATGGTTGGTGGTATAGTGTGATTGGTCATTTGGAAACATGTGAAGGAGAAGGAAACCATTGTCAATGTGACAATAAAGATATAGTGATTTTGGAGTTCAGACAGTACACAGCTGGTTCAAGATGGAGAAAAACAATGATAAATAGAAAGAATCATAGAGAAGAAGGAAATGAGATTGAAGGTTTTTATGGAGGGATCAGAAAGTTACATAGCAAGGAGGAAATTACAAAGTGGAAGAAACTTTGGCCAACAAAAAATGTGGAATAG 1167 0.3393 MLYFLISLVSFLMILSKSFTNKPLSSNGTKLVSNVFCGKLFSFLASRIKTRTSFQAFSFIQLSLFIQSPNKSLVLSKFEENQRKVSLLDLHDLPLDCILGKLSPSELCNVAKVCKSLRKSCRSDYLWEKHMKMRWGKVFGDAAYREWKCYVASRNIEKRLNQHKNQKNILHDFLHLFWIKSKAEKDMKLKLDDSIASLYLSLENGNFWFPAQVYNRENGHAGFMLSCYDAQLCYDSRTNTFQARYSPHGRWTIEENIKWERLRVPPIDSCSHVLHISDCLNDLKPGDHVEIQWRRNKEFPYGWWYSVIGHLETCEGEGNHCQCDNKDIVILEFRQYTAGSRWRKTMINRKNHREEGNEIEGFYGGIRKLHSKEEITKWKKLWPTKNVE 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02224 388 SMART fbox_2 93 130 IPR001810 GO:0005515
Vifa5g02224 388 PANTHER ESTS AU081301(E20138) 1 387 - -
Vifa5g02224 388 SUPERFAMILY F-box domain 90 156 IPR036047 GO:0005515
Vifa5g02224 388 Pfam F-box domain 89 129 IPR001810 GO:0005515
Vifa5g02224 388 Gene3D - 73 166 - -
Vifa5g02224 388 ProSiteProfiles F-box domain profile. 84 130 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02224 Vifa-Chr5 737329368 737331211 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02224 - - gmx:100806109 544.658