Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02223 ATGAACGGAGGCCCATCTGGTTTCACAAATGCTCCTGTTACAAGGGCTTTCATCATCGCTTCAGCGCTTTTCTCAATCTTCTTTGGGATCCAGGGTCGTTTCAACACTCTGGGGTTGTCGTATCAGGATATTTTTGGAAAGCTTCGCGTTTGGAAGTTGATTATGTCGTTATTTTCCTTCACATCAACACCGGAGTTGATGTTTGGACTATATCTTCTGTATTACTTCAGGGTGTTTGAGAGACAAATCGGTTCCAATAAATACTCGGTGTTTATTGTGTTCTCTGTATTGGCTTCACTACTGTTTGAAGTTTTTGCTGTGGCATTTTTAAAAGATCCTTCAGCAACCCCAGTCACTCCTGGACCTTATGGCCTTATATTTGCTTCGTTTGTACCCTTTTTCTTTGACATTCCTGTTTCGACTCGGTTCCGTTTATTTGGTTTCCACTTCTCAGATAAGTCATTCATATATCTAGCTGGTCTTCAGCTTCTACTGTCATCATGGAAAAGGTCCATCTTACCAGGGGTGTGTGGCATCCTTGCTGGTTCCTTATACCGTTTGAATGTCTTTCATATCCGCAAAGCAAAGTTCCCGGAGTTTATTTCATCATTCTTTTCACGAATTTCCTTGCCATCTATGGGGAGTCCACGCATAACACCAACGAGGAATGTCTTGGGCAATGTTCCATCCTACCCAGGTCGCCAAATGGAGAGAAACTATCCTGCTCCAGTGCATTCTGCAGTAGAACCGTCGGAAGACTCAATTGCAACCCTTGTTTCAATGGGATTTGACAGGAATTCTGCAAGACAAGCCTTAGTGCAGGCCAGAAATGATGTGAATGTAGCGACAAACATCCTTCTAGAAGCACAGGCTCACTAA 879 0.4334 MNGGPSGFTNAPVTRAFIIASALFSIFFGIQGRFNTLGLSYQDIFGKLRVWKLIMSLFSFTSTPELMFGLYLLYYFRVFERQIGSNKYSVFIVFSVLASLLFEVFAVAFLKDPSATPVTPGPYGLIFASFVPFFFDIPVSTRFRLFGFHFSDKSFIYLAGLQLLLSSWKRSILPGVCGILAGSLYRLNVFHIRKAKFPEFISSFFSRISLPSMGSPRITPTRNVLGNVPSYPGRQMERNYPAPVHSAVEPSEDSIATLVSMGFDRNSARQALVQARNDVNVATNILLEAQAH 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02223 292 Pfam Rhomboid family 49 190 IPR022764 GO:0004252|GO:0016020
Vifa5g02223 292 Gene3D - 232 291 - -
Vifa5g02223 292 Pfam UBA/TS-N domain 251 286 IPR015940 -
Vifa5g02223 292 SUPERFAMILY UBA-like 245 289 IPR009060 GO:0005515
Vifa5g02223 292 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 249 289 IPR015940 -
Vifa5g02223 292 SMART uba_6 251 288 IPR015940 -
Vifa5g02223 292 Gene3D - 9 188 IPR035952 -
Vifa5g02223 292 SUPERFAMILY Rhomboid-like 11 187 IPR035952 -
Vifa5g02223 292 PANTHER RHOMBOID-RELATED PROTEIN 3 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02223 Vifa-Chr5 737237268 737242987 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02223 K25216 - gmx:100805217 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02223 5 737237268 737242987 Vifa5g02223 5 737237268 737242987 ECH