Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02200 ATGACAAAGATTAGTCCTGAAATTGAAACTATGATGCCACTGGAAGCAGTTCCGCCTGTTTCGGCCGATGTGAGTTTCATTTCTAATAGCTTTCCGAAGTATAAACTAGGAGCCGATCATCAAGTTTATCAAGAGCCTGCTGAGGATAACCATGGTCCTTCTTTGAAAGATGTCATTGAAGAAGAAGCTTCCAATTTGTTGGACCAGAACAAGCGTATCTCAGTTCGTGATCTTGCTAGTAAATTTGACAAGAACTTGTCTGCAGCTGCGAAGTTGTCGAATGAGGCAAAGCTAAGAGAGTTGCCATCTTTGGAGGGGCATGTTCTTTTGAAAAAGCTAAGAGATGCATTAGAATCTTTGAAAGGCTGTTTTACGGGAAGAAATAAAGAGGATGTCGAGAAAGCTATCTCTATGGTGGAAGCTTTGGCTGTTAAGTTGACTCAGAATGAAGGAGAACTGATTCAAGAGAAGTTTGAAGTGAAAAAGCTTGTGAACTTTCTTAAACAGGCTTCGGAAGATGCTAAAAAGTTGGTTAATCAAGAGAAGTCCTTTGCCTGTGCGGAAATCGAGAGTGCTAGAGCAGTGGTGCTGAGAATTGGCGAGGCACTCGAGGAACAAGAAAAAGCTACTCAAGCTTCTAGACCACAGGATGTGGATGGACTAGTAGAAGAGGTTCAAGAGGCTAGAAGAATCAGATTGCTGCATCAGCCAAGCAAGGTTATGGCCATGGAATATGAACTCCGTGCTCTAAGGGATCAAATTCAAGAAAAATCTATATTTTCAATTCAGCTTCAGAAAGAGCTAACAATGAGCAAGTGGGACAAGGAGAATAAATCTCATTCGTATAAGTTAGACGGTTCCGAAGCTTTGGGTTCATACTTGCAAGTCAAGCCGTGCTCAAATGAAGTGCTGCAGGTTTCAAAATGTTCGTTTCAGTGGTATCGCCTGTCATCTGAAGGCAGCTGGAGGGAAGTTATTTCAGGTTCCGACAAATCAATATATGCTCCTGATCCCCTTGATGTTGGGAGAATGTTACAAGTGGACATTGTATCCAATGGCAAGAAACTCACACTAACAACTAATCCCATTCAAACTGTCGCAGGACTAGGAAGCCATGTGGAAACACTTCTCCGAAAATCCAATACTGATTTTAATGTAGTTATTTCTCAGATGAATGGAAAAGATCACTCATCACATTCTACTCATTCATTCAATGTGGGGAGAATGAGGATAAAGCTATGTAGGGGTTGGATTACAAAAGCTAGAGAGATTTACTCCCCAACAATGCAGCTATGTGGAGTCAGAAGTGATGTCGGTAATGCAGCAAAGGCATTATTTTGGCAAGCAAGAAAAGGGCTGTCATTTGTGTTAACCTTTGAATCAGAGAAAGAAAGAAACGTTGCCATTATGATTGCACGGAAACACGCTCTTGATTGCAATGTTGTGCTTGCTGGGCCAGATGATCTAGTGTAG 1473 0.4168 MTKISPEIETMMPLEAVPPVSADVSFISNSFPKYKLGADHQVYQEPAEDNHGPSLKDVIEEEASNLLDQNKRISVRDLASKFDKNLSAAAKLSNEAKLRELPSLEGHVLLKKLRDALESLKGCFTGRNKEDVEKAISMVEALAVKLTQNEGELIQEKFEVKKLVNFLKQASEDAKKLVNQEKSFACAEIESARAVVLRIGEALEEQEKATQASRPQDVDGLVEEVQEARRIRLLHQPSKVMAMEYELRALRDQIQEKSIFSIQLQKELTMSKWDKENKSHSYKLDGSEALGSYLQVKPCSNEVLQVSKCSFQWYRLSSEGSWREVISGSDKSIYAPDPLDVGRMLQVDIVSNGKKLTLTTNPIQTVAGLGSHVETLLRKSNTDFNVVISQMNGKDHSSHSTHSFNVGRMRIKLCRGWITKAREIYSPTMQLCGVRSDVGNAAKALFWQARKGLSFVLTFESEKERNVAIMIARKHALDCNVVLAGPDDLV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02200 490 PANTHER STOMATAL CLOSURE-RELATED ACTIN-BINDING PROTEIN 1 1 488 IPR039640 GO:0003779|GO:0007015|GO:0010119
Vifa5g02200 490 Pfam Ig domain of plant-specific actin-binding protein 282 378 - -
Vifa5g02200 490 Pfam Coiled-coil regions of plant-specific actin-binding protein 103 268 IPR032009 -
Vifa5g02200 490 Gene3D - 366 490 - -
Vifa5g02200 490 Pfam Actin-binding domain of plant-specific actin-binding protein 55 97 IPR032012 GO:0003779
Vifa5g02200 490 Pfam PH domain of plant-specific actin-binding protein 381 488 IPR041144 -
Vifa5g02200 490 Gene3D - 269 365 - -
Vifa5g02200 490 Gene3D - 102 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02200 Vifa-Chr5 730497116 730500055 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02200 K26540 - gmx:100798320 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02200 5 730497116 730500055 Vifa5g02200 5 730497116 730500055 ECH