Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02193 ATGGATTCATCCAACGATGCAGTTTCTGGGTTCAAAGATAAGGAGTCAATGGTTGACCCTTTTTTGGTTGAAGCTCTTCAGAACCCTCGTCATCGTCTTACCATTCTGAGGATGGAGCTGGATATCCAGAAATTTCTGAATAATGCGGATCAACAGCATTTTGAGTTTCAGCATTTCCCTTCTTCCTATCTCAGATTGGCTGCTCATCGTGTTGCTCAACACTACAGTATGCAAACAATGGTTCAAGATAATGGCTTAGATGGCCAGAGTAAAATTCTGGTCAGGAAGTTACCTGAAAGCAAGTATCCTGTGGTTCGGTTGTCTGAAATACCTGTAAAACAGTTGGACAATGAGAAATCTGAGCAGAAAAAAATTGTTATTCGACCTAGGCCTAATAAATGTTTGAATGGAGCCAATGATTCTGCTAGAAAAGGAAATCCTCTAAGAAGCGTGGAAGAGAGGAAGGAGGAATATGATCGGGCAAGAGCACGTATCTTTAATGGCTCTACTGGCTTTGATTCAAGTGATACCCTGGCTTTGGTCCCAATAGATGGGAGAAGTTCTTTAGTGAACAAGGATGAGAGTGAAACTAGCAAAATACCCATGACTGATTCTGAAAGATACATTAGTATGAGAGATAATAGTTATCCTCGAGTTGCCATTATCAGAGATAGGGAAAAGGATCGAAGTGATCCAGATTATGATCGTAGCTATGGAAGGAGTCTCTCAGCCTCTGCAGTTAATTTGGTGCCCTTTAATTTGCCAAAAGCTCAACCTTCATTTGCTCAGTATGACATTACTTTTAATCAGTTGGGTCAGATGTCACAAACTCAGGCTTCACTTGGATACAGACCTCCTTCAACCCCGATAATGAGCCCTTTTTGTACCCCAGGATTGAATCCAGCATCTGGAGATGGTGCTTACCTACAGTGGCCAAGTCCTACAATGATGTATGCACATTCATATGACCAATTTAGACATGCTGTTTACCAGGCTCCATTTGGTCAACCGTTGAGCTTTGATTATTCACAGAACTATTAG 1041 0.415 MDSSNDAVSGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQKFLNNADQQHFEFQHFPSSYLRLAAHRVAQHYSMQTMVQDNGLDGQSKILVRKLPESKYPVVRLSEIPVKQLDNEKSEQKKIVIRPRPNKCLNGANDSARKGNPLRSVEERKEEYDRARARIFNGSTGFDSSDTLALVPIDGRSSLVNKDESETSKIPMTDSERYISMRDNSYPRVAIIRDREKDRSDPDYDRSYGRSLSASAVNLVPFNLPKAQPSFAQYDITFNQLGQMSQTQASLGYRPPSTPIMSPFCTPGLNPASGDGAYLQWPSPTMMYAHSYDQFRHAVYQAPFGQPLSFDYSQNY 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02193 346 CDD R3H_encore_like 31 96 - -
Vifa5g02193 346 SUPERFAMILY R3H domain 6 120 IPR036867 GO:0003676
Vifa5g02193 346 ProSiteProfiles SUZ domain profile. 101 170 IPR024771 -
Vifa5g02193 346 Gene3D - 9 131 IPR036867 GO:0003676
Vifa5g02193 346 Pfam SUZ domain 121 169 IPR024771 -
Vifa5g02193 346 MobiDBLite consensus disorder prediction 131 155 - -
Vifa5g02193 346 Pfam R3H domain 34 85 IPR001374 GO:0003676
Vifa5g02193 346 ProSiteProfiles R3H domain profile. 32 96 IPR001374 GO:0003676
Vifa5g02193 346 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 15 336 - -
Vifa5g02193 346 SMART R3H_4 16 97 IPR001374 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02193 Vifa-Chr5 727682432 727686170 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02193 - - gmx:100814835 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02193 5 727682432 727686170 Vifa5g02193 5 727682432 727686170 ECH