Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02177 ATGACAGAGGTGTCGATGTGTTGCAGCAGTAGTTGTGAGCTGAGCCCAGATGAAGAGAGGATCATCATCAGAGACATTGCACTTTCTGTTCAAACTAATATCAAAGAAGGCGACACCTTCTTCATCATCACTCAGAGATGGTGGCAACATTGGATTGAATATGTGAACCAAGACCAGACAAACCCTTCTTATGATGGATCTTCCTTTCATGAACATAGCGATTTGGCTAGTTTAAATGCTTTAAAGAGGCCAGCTGGTATTGATAATTATGATTTGATAGATAATACTGGATCAGAGGACTCTAGTACGGGTATTCAAATTCACGATACACTCTTAGAAGGGCGTGACTATGTATTACTTCCCCAAGTGGTTTGGGACCAATTATTTAAATGGTATGGTGGTGGACCATCATTAGCGAGGAAAGTTATTAGTTCAGGTCTTTCCCAGACTGAATTTGCAGTAGAGGTGTATCCTTTACGCCTTCAATTACTCATGTTGCCAAAAAATGTTCGGTCCACTATAAGAATAAGCAAGAAGGAAACTATTGGACAGCTACACAAAAACACTTGTGAAATATTCGATCTTCAGTTGGACCAGGTGCGCATCTGGGATTATTATGGCCATCGGAAGCATGCCTTGATGAATGACATGGATAAGACTCTAGATGATGTCAATCTACAAATGGACCAAGATATTCTTATTGAGGTCGTAAACAATACAAATAGCACAATCTCTGCTCAAGAAAATGGATCAGCACAGAGGGAAGCAAATTCTGTTCTTGTGGAGCCTTCAAAGTCAAGCTTATCCGCTGCTGGTGCCCCGTCTACTAGCAAGGGTGCATCTAGAGGCAACAATATTGAACATTCTTCATCTCAGAAACTAAATTCTCCGGACAGAGATTCAGAAAACCCTTATGGGACTCTAGGTGTCACCACAAGAGGGTCATTTGGTGGTCTCACTGGGTTGCTAAATCTTGGCAATACTTGTTTCATGAATAGTGCAATACAATGCCTTGTTCATACACCAGAATTTGCTAGGTACTTTAGGGAGGACTATCATCAAGAGATAAATTGGCAAAATCCACTTGGCATGGTTGGTGAACTAGCCTTAGCATTTGGTGAGTTGCTTCGAAAACTATGGGCACCTGGGCGAACACCGATTGCTCCTCGGCCTTTTAAAGCAAAGCTTGCTCGCTTTGCACCTCAGTTCAGTGGGCACAACCAACATGATTCTCAGGAACTCTTAGCATTTTTACTTGATGGTCTCCATGAAGACTTAAATCGTGTTAAGCACAAACCATATATAAAGTCTCGAGATGCCGATGGCCGACCGGATGAAGAAGTGGCTGATGAGTATTGGGCAAATCATATTGCCCGTAATGATTCCATAATTGTTGATGTATGTCAGGGACAATACAAGTCGACTTTAGTTTGTCCAGTTTGCAACAAAGTCTCGGTCACATTTGATCCTTTCATGTACCTTTCCCTGCCTCTCCAGTCCGCCACCAATAGGACCATGACAGTGACAGTTTTTAGTTGCGATGGTTCTACCCTACCATCTCCGTGTACAGTAACTGTGCCCAAACAGGGACGATGCAGAGATCTTATACAAGGGCTTAGCAATGCATGCTCATTGAAACATAACGAGAGGATAGTGCTTGTTGAGATACGAAACCATTTGATCCATAGATTTTTTGAAGATCCCCTTCAATTGTTGTCCTCAATTAAAGATGATGATCGTCTTGCCGCTTACAAGATTCCAAAGATGGACAAAAACACAAAGTACCTCCAGTTGATACATCGCCACAGAGAGCAGAGTAGTGACTCACATACCGTTTCAGGATGGAAACCATATGGAACACCTATTGTTTCGTTGATCTCGTGCGATGATACAATCACAAGAAGTGACATACAAGTAATAGTGAATGGTATACTCTCTCCACTTCTTTTGAAAGCTGAAACCAAAGCCGTGTCGAATTCAACAAATAAGGATGATACTGTTTCAAAAGCAACACACCTACCAACGTTACCTCTACTATTGGTAGATGATAACAATGCTTGCATTGATCTTTCAATGGGAGGGGAGAAAGTAGTTAAACTATCACCATCATCAGCAAGAGTTCTAGTTTATATTGATTGGTCTCAGAAGCTTTTGGAGAAGTATGATACTCATCCACTTGAAACTTTGCCTGAAGTTTTGAAATATGGGCCTGTAACCAAAAAAGCCCGTTCTGAACCTCTCTCGTTGTACACTTGTTTAGAAGCTTTTCTGCGTGAAGAACCTTTGGTGCCTGAAGATATGTGGTACTGTCCTAAATGCAAAGAGAGACGACAGGCAAGCAAAAAGCTTGATTTATGGAGACTCCCCGAGGTTTTGGTAATTCATTTAAAGAGGTTCTCATACAGCAGGTCAATGAAGCATAAACTCGAGACTTTCGTTAACTTTCCTATTCATGATTTTGATTTAACAAATTACATAGCCAACAAAGACAACTCGCGGCGTCAAGTGTATGAACTCTACGCCCTTACCAATCATTACGGTAGTATGGGTAGCGGACATTATACTGCACATATTAAGCTTTTAGACGAAAACAGGTGGTACAATTTTGATGATAGCCACATATCGCTCATAAGTGAAGACGAGGTTAATACTGCTGCCGCATATGTTCTGTTTTACCGGAGGGTGAAAACTGACGATGAGATTGTAAGCAATGGAGATTAG 2721 0.4142 MTEVSMCCSSSCELSPDEERIIIRDIALSVQTNIKEGDTFFIITQRWWQHWIEYVNQDQTNPSYDGSSFHEHSDLASLNALKRPAGIDNYDLIDNTGSEDSSTGIQIHDTLLEGRDYVLLPQVVWDQLFKWYGGGPSLARKVISSGLSQTEFAVEVYPLRLQLLMLPKNVRSTIRISKKETIGQLHKNTCEIFDLQLDQVRIWDYYGHRKHALMNDMDKTLDDVNLQMDQDILIEVVNNTNSTISAQENGSAQREANSVLVEPSKSSLSAAGAPSTSKGASRGNNIEHSSSQKLNSPDRDSENPYGTLGVTTRGSFGGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHQEINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKAKLARFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSATNRTMTVTVFSCDGSTLPSPCTVTVPKQGRCRDLIQGLSNACSLKHNERIVLVEIRNHLIHRFFEDPLQLLSSIKDDDRLAAYKIPKMDKNTKYLQLIHRHREQSSDSHTVSGWKPYGTPIVSLISCDDTITRSDIQVIVNGILSPLLLKAETKAVSNSTNKDDTVSKATHLPTLPLLLVDDNNACIDLSMGGEKVVKLSPSSARVLVYIDWSQKLLEKYDTHPLETLPEVLKYGPVTKKARSEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKDNSRRQVYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISLISEDEVNTAAAYVLFYRRVKTDDEIVSNGD 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02177 906 Gene3D Cysteine proteinases 714 902 - -
Vifa5g02177 906 SUPERFAMILY Cysteine proteinases 318 895 IPR038765 -
Vifa5g02177 906 Pfam DUSP domain 37 143 IPR006615 GO:0004843
Vifa5g02177 906 SMART dusp 33 146 IPR006615 GO:0004843
Vifa5g02177 906 ProSiteProfiles DUSP domain profile. 14 143 IPR006615 GO:0004843
Vifa5g02177 906 CDD Peptidase_C19R 737 893 - -
Vifa5g02177 906 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 231 894 - -
Vifa5g02177 906 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 321 336 IPR018200 GO:0004843|GO:0006511
Vifa5g02177 906 Gene3D - 157 245 - -
Vifa5g02177 906 SUPERFAMILY DUSP-like 15 143 IPR035927 -
Vifa5g02177 906 Gene3D Cysteine proteinases 311 534 - -
Vifa5g02177 906 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 895 IPR028889 -
Vifa5g02177 906 Gene3D - 7 156 IPR035927 -
Vifa5g02177 906 Pfam Ubiquitin carboxyl-terminal hydrolase 320 892 IPR001394 GO:0004843|GO:0016579
Vifa5g02177 906 MobiDBLite consensus disorder prediction 245 309 - -
Vifa5g02177 906 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 837 854 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02177 Vifa-Chr5 724707103 724719309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02177 685 896 Miscellaneous Gene Families AT2G24640 29.302 1.24e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02177 - - mtr:11408935 1681.38