Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02158 ATGGCCAAAGGCGTGATATCTGACGACGAAGATGAAGTTGAGCTTGGGATGGATGAGAGAGAGCCCGCTGATGGTGAAGAATTGGAAGAAGGAGGAGGAGATATGGATGAGGATGACGAGGAAGAAGAGGGACAAGATGAGTATGAAAAGGATGGTTTTATAGTTGATGAAATTGAGGAAGAAGAGGAGCAGGATGAAGAAGAAAGAGCAGACAGTGACGAAGAGCGGCAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAATTGTTGGAGGACAACAATATCAATATTCATCGTCGGAAGGAAAGCAAAAAATTCAAGCGATTAAAAAAGGGCCAGAGGGATGAGGAGGGGCAATCTGGACAATCTGACGAAGAAGAGTTTTATGGAAGTGGTAAGGTTGGGCGAACTGCTGAGGAGAAGCTTAAGCGCAGTTTATTTGGCGATGATGAAGGAACTCATCTTGAAGACATTGCCGAAGAGGAGGAGCAAGGAGAAGAGGAGGAGGATGCTGACATCGGGGAAGAAGATGAAATGGCCGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGAGCCCCTGTGAGGACTAAGAAGCCAAAGGGTGTCAGAAGGCCTAGGCAGGCACCTGGAGTCTCGTCCTCAGCTTTACAAGAAGCTCAAGAACTATTTGGTGATGTCGATGAGTTGCTTTTGGCTCGCAGTCGTAGTCGAGGACCCGATCACAAAGAGACTAGGCTTGAAGATGAATTTGAACCTATTGTTCTCTCTGAGAAATATATGACAGAGAACGATGACCGAATAAGGGAATGCGATATTCCAGAGAGAATGCAGATATCAGAGGAGAGTACTGGTGCTCCTTCACTGGATGAAAATAGTATAGGTGAAGAGAGTCAGTGGATAGTTGCTCAAGTTAAAAGTGGGGCAGTCCCTTGGATTCCCAAGTTAAAGCCAAAGTTAGATTCAGACTCCAAAAATAATGGGAAGGATGAGGATCTACCAATTGACAAGGATGATATTGTCAGCTTTAAGGGGAAGGATGAGGATCTACCAATCGACAAGGATGATATTGTCAGATTTAAGGGGAAGGATGAGGATCTACCAACTGACAAGGATGATGTTGTCAGATGTAAGGGGAAGGATGAGGATCTACCAATTGACAAGAATGATATTGTCAGATTTTTGGAACTGCATCATGTGCAAAAATTAGATATTCCTTTTATTGCCATGTATCGGAAGGAGGAGTGTTTTAGCTTATTGAAAGACCTAGAGCGACCTGAAGCTGGAAATGATAATCGGGATAAGAATAACACGACACCTACTCTAAAATGGCACAAGATACTCTGGGCTCTACAGGACCTGGACAGGAAGTGGTTGCGTCTTCAGAAGCGGAAGAGTGCCCTTCAATTATACTACAATAAACGGTTTGAAGAAGAGTCTCGTCGTGTATACGATGAAACAAGACTAAACTTGAATAGGCAATTGTTTGAATCAGTTATGAGATCACTGAAGGAGGCAGAATCAGAGAGGGAGGTTGATGATGTTGACTCCAAGTTCAACTTGCATTTTCCACCAGGTGAAGCTGGTGTTGATGAAGGGCAGTACAAAAGGCCAAAGCGGAAATCAATGTATAGCACTTTCAGCAAGGCGGGTCTGTGGGAAGTTGCAAGCAGGTTTGGGTCTAGTTCTGAGCAAATTGGGTTATGTCTATCTGTAGTTCAGCTGCCTGAGCTCGTAGTAGATCCAAAGGAAACTCCAGAAGAGGTGGCTTCTAACTTCACATGTGCCATGTATGATACCCCTGAAGAAGTTCTTAAATGTGCTAGGCACATGGCAGCTGTTGAGATAAGTTGTGAGCCCAACATAAAGAAATATGTTCGTAACTACTTTATTGACCACGCCGTGGTGTCAACCTCCCCAACTCCCGATGGAAATACAACGATAGATTCGTTCCATCAGTTTTCTGGGGTGAAGTGGCTGCGAGAGAAGCCTTTGAGCAAATTTGAGGATGCCCAATGGCTCCTTATACAGAAGGCAGAAGAAGACAAACTCATTCAAGTTACTATTAAGCTTCCTGAAGAACATCTTAATAAGTTAATAGACGAATTCAATGAGTATTATATCAGTGATAGTGTCAGCAGATCTGCTCAACTGTGGAATGAACAGAGAAAGCTGATACTGCAGGATGTAATTTTTCGATTTCTTTTACCATCAATGGAAAAAGAAGCAAGAGGTGTCTTAGCAAACAAAGCAAAGCACTGGGTACTTATGGAGTATGGGAAGGCCTTGTGGAGTAAGGTTTCTGTAGGGCCTTATCAACAAAAGGAGAATGATCTTAGCTCGGATGATGAGGCTGCTCCTAGGGTTATGGCCTGCTCTTGGGGCCCTGGAAAGCCACAAACAACTTTTGTTATGTTAGATTCATCGGGAGAAGTGCAAGATGTGCTATACACTGGGTCACTCACTTTAAGGTCACAGAATGTCCATGACCAACAAAGGAAGAAGAACGACCAGGAACGCGTGTTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGAGCAGCTAACTTGTCTTGCACACGTTTGAAAGAAGATATTTATGAGGTTATTTTTAAGATGGTTGAGGAAAACCCTAGAGATGTTGGGCATGAAATGGACGGGCTCAGCATTGTGTATGGAGATGAATCTCTACCCCGTCTTTACGAAAATTCCCAAATTTCCTCTGAACAACTTCCTTCGCAGCAGCTAGGTATAGTCAGGCGGGCTGTTGCTCTTGGTCGATTTCTCCAGAATCCATTGGCAATGGTTGCAACATTATGTGGGCCCCGAAAGGAAATATTGTCATGGAAACTGACCCCTTGGGAGAGTTTTCTCAACCCGGATGATAAAATTGGGATAGTTGAGCAGTTTACTTCGGGGCTTGGTCCGCGGAAGGCTGCATCCTTGCAGAGATCGCTAGTTAGAGCCGGCTCAATTTATACCAGGAAGGATTTTGTGACCCAACATGAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGATTGGCTGCTAGCAGCAGCCAATTTATTGATTTGCTGGATGATACACGAATTCATCCAGAATCATATATTCTTGCACAAGAGTTGGCCAAAGATGTCTATGATGAAGACGGAACGGGTGATGCAAATGATGACGATGATGCCTTAGAGATGGCCATAGAACATGATTGGCGTAAGCAATATGAGGAACCAAGTCAGGATGAGGAGTTCTATATGATTTCAGGTGAGACTGAAGAGACTCTTGCTGAAGGTAAAATGGTCCAGGTTACCGTTCGCCGAGTTCAAGCCCAAAGAGCAATCTGTGGGCTAGAATCTGGAATGACCGGAATCCTCATGAAAGAAGACTATGCAGATGACTTGAGAGATATAATTGAATTATCTGATAGGCTACATGAAGGTGACATGCTCACTTGTAAAATCAAGTCAATCCAAAAAAATAGGTATCAAGTCTTCCTTGTTTGTAAAGAAAGTGAAATGAGAAGTGATCGGTCACATCACAACCACAACTTTGATCCCTATTATCACGAAGACCGGAGTTCCTTGCCAAATGAGCAAGACAAAATTCGGAAAGAAAGGGAGCGTTCAAAGAAGCATTTCAAGCCTAGGATGATTGTTCATCCTAGATTTCAAAACATAACTACCGATGAAGCATACGAGTTCTTGTCAGACAAGGATCCTGGTGAAAGTATTTTTCGTCCTAATAGTAAGGGTCCTTCATACCTTACTTTGACTCTTAAAATTCATGATGGAGTATATGCCCACAAGGAGATAATTGAAGGTGGGAAGGAACTCAAGGACATCACAAGCTTGCTTCGAATCGGAAAGACTCTTAAAATTGGAGAGGATACTTTTGAGGATTTAGATGAGGTTATGGACCGTTATGTTGATCCCTTGGTTACTCATTTAAGAACAATGTTAAACTATCGCAAGTTCAGGACGGGTTTGAAAACAGAAGTTGACGAACTTTTGAAGGCTGAAAAGGAAGAGAATCCAATGCGCATAGTTTATAGTTTTGGCATCTGTCATGAACATCCTGGCACATTTGTATTGACTTACATAAGAAGTACAAATCCGCACCATGAGTATATTGGTCTTTACCCCAAAGGATTCAGGTTCCGCAAAAAGATGTTTGAGGATATTGACCGGCTTGTGGCATATTTTCAAAGGCACATCGATGATCCACAAAATGATTCCGCACCTTCCATTAGATCAGTAGCTGCAATGGTGCCAATGCGAAGCCCTGCTGCTGGTGGCTCATCAGGGGCATCTGTGGGTAGTGGCTGGGGTGGTTCGAACAGCGAGGGTGGTTGGAGAGGAGGTCACTCGTATGATAGGGACCGATCTTCTACTCCTGGTTCCAGAACAGGACGACCTGATTACAGAAATAATGGGAATCGAGATGAACACCCTAGTGGATTGCCTCGTCCATATGGTGGTGGACGAGGGCGTGGTCGTGGTTCTTATAAAAATAGTAGTAGAGGACCCAACTCTAACAATGAAAGGCGTGCGGGTGCAACCAGATGGGGATCTGCCGTGAAAGACGGGGATGACAGTTTAAGCAACTTCCCAGGGGCTAAGGTTCAAAATTCCCCTGGAAGAGAAGCATTTCCTGGTGGTTGGGGAGGTGGAGCTAGTGCTGATGACAAAAGTGGCTGGGGAGGTGGAGCCAGTGATGGTGACAAAAGTGGCTGGGGAGGTGGAGCTAGTGGTGGTGACAAAAGTGGCCGGGGTGCTGCTCTAAGCGATGCTGAACAGGGAAACTCTGGCTGGGGAACTGGATCAAAGAAAGCTGGCGACAATGGATGGTCTGGAAACTGA 4917 0.4425 MAKGVISDDEDEVELGMDEREPADGEELEEGGGDMDEDDEEEEGQDEYEKDGFIVDEIEEEEEQDEEERADSDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGQRDEEGQSGQSDEEEFYGSGKVGRTAEEKLKRSLFGDDEGTHLEDIAEEEEQGEEEEDADIGEEDEMADFIVDEEEVDENGAPVRTKKPKGVRRPRQAPGVSSSALQEAQELFGDVDELLLARSRSRGPDHKETRLEDEFEPIVLSEKYMTENDDRIRECDIPERMQISEESTGAPSLDENSIGEESQWIVAQVKSGAVPWIPKLKPKLDSDSKNNGKDEDLPIDKDDIVSFKGKDEDLPIDKDDIVRFKGKDEDLPTDKDDVVRCKGKDEDLPIDKNDIVRFLELHHVQKLDIPFIAMYRKEECFSLLKDLERPEAGNDNRDKNNTTPTLKWHKILWALQDLDRKWLRLQKRKSALQLYYNKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGSSSEQIGLCLSVVQLPELVVDPKETPEEVASNFTCAMYDTPEEVLKCARHMAAVEISCEPNIKKYVRNYFIDHAVVSTSPTPDGNTTIDSFHQFSGVKWLREKPLSKFEDAQWLLIQKAEEDKLIQVTIKLPEEHLNKLIDEFNEYYISDSVSRSAQLWNEQRKLILQDVIFRFLLPSMEKEARGVLANKAKHWVLMEYGKALWSKVSVGPYQQKENDLSSDDEAAPRVMACSWGPGKPQTTFVMLDSSGEVQDVLYTGSLTLRSQNVHDQQRKKNDQERVLKFMTDHQPHVVVLGAANLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSQISSEQLPSQQLGIVRRAVALGRFLQNPLAMVATLCGPRKEILSWKLTPWESFLNPDDKIGIVEQFTSGLGPRKAASLQRSLVRAGSIYTRKDFVTQHELGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYDEDGTGDANDDDDALEMAIEHDWRKQYEEPSQDEEFYMISGETEETLAEGKMVQVTVRRVQAQRAICGLESGMTGILMKEDYADDLRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKESEMRSDRSHHNHNFDPYYHEDRSSLPNEQDKIRKERERSKKHFKPRMIVHPRFQNITTDEAYEFLSDKDPGESIFRPNSKGPSYLTLTLKIHDGVYAHKEIIEGGKELKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVTHLRTMLNYRKFRTGLKTEVDELLKAEKEENPMRIVYSFGICHEHPGTFVLTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQNDSAPSIRSVAAMVPMRSPAAGGSSGASVGSGWGGSNSEGGWRGGHSYDRDRSSTPGSRTGRPDYRNNGNRDEHPSGLPRPYGGGRGRGRGSYKNSSRGPNSNNERRAGATRWGSAVKDGDDSLSNFPGAKVQNSPGREAFPGGWGGGASADDKSGWGGGASDGDKSGWGGGASGGDKSGRGAALSDAEQGNSGWGTGSKKAGDNGWSGN 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02158 1638 SUPERFAMILY Ribonuclease H-like 796 952 IPR012337 -
Vifa5g02158 1638 SUPERFAMILY Nucleic acid-binding proteins 1112 1201 IPR012340 -
Vifa5g02158 1638 Gene3D - 552 799 IPR023323 -
Vifa5g02158 1638 Pfam Holliday-junction resolvase-like of SPT6 795 952 IPR028231 -
Vifa5g02158 1638 Gene3D - 1093 1193 IPR012340 -
Vifa5g02158 1638 MobiDBLite consensus disorder prediction 11 70 - -
Vifa5g02158 1638 Pfam Helix-hairpin-helix motif 981 1030 IPR032706 -
Vifa5g02158 1638 Gene3D SH2 domain 1225 1336 IPR036860 -
Vifa5g02158 1638 MobiDBLite consensus disorder prediction 1618 1638 - -
Vifa5g02158 1638 MobiDBLite consensus disorder prediction 162 197 - -
Vifa5g02158 1638 Pfam SH2 domain 1206 1423 IPR035420 -
Vifa5g02158 1638 Gene3D - 295 535 IPR023319 -
Vifa5g02158 1638 FunFam Transcription elongation factor spt6 1337 1430 - -
Vifa5g02158 1638 CDD SH2_Nterm_SPT6_like 1239 1327 IPR035019 -
Vifa5g02158 1638 ProSiteProfiles S1 domain profile. 1117 1188 IPR003029 GO:0003676
Vifa5g02158 1638 MobiDBLite consensus disorder prediction 1522 1537 - -
Vifa5g02158 1638 MobiDBLite consensus disorder prediction 327 344 - -
Vifa5g02158 1638 Pfam Acidic N-terminal SPT6 34 123 IPR028083 -
Vifa5g02158 1638 FunFam Transcription elongation factor spt6 786 954 - -
Vifa5g02158 1638 FunFam Transcription elongation factor spt6 376 540 - -
Vifa5g02158 1638 SUPERFAMILY Tex N-terminal region-like 391 774 - -
Vifa5g02158 1638 CDD SH2_Cterm_SPT6_like 1338 1424 IPR035018 -
Vifa5g02158 1638 SMART rnase_8s 796 914 IPR006641 GO:0006139
Vifa5g02158 1638 MobiDBLite consensus disorder prediction 71 91 - -
Vifa5g02158 1638 FunFam Transcription elongation factor spt6 543 807 - -
Vifa5g02158 1638 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 18 981 IPR017072 GO:0032968
Vifa5g02158 1638 SMART S1_6 1115 1188 IPR022967 -
Vifa5g02158 1638 MobiDBLite consensus disorder prediction 274 303 - -
Vifa5g02158 1638 Gene3D - 800 942 IPR037027 GO:0006139
Vifa5g02158 1638 Gene3D - 970 1032 - -
Vifa5g02158 1638 MobiDBLite consensus disorder prediction 325 344 - -
Vifa5g02158 1638 FunFam Transcription elongation factor spt6 1110 1198 - -
Vifa5g02158 1638 PIRSF Spt6 3 981 IPR017072 GO:0032968
Vifa5g02158 1638 PIRSF Spt6 1087 1493 IPR017072 GO:0032968
Vifa5g02158 1638 PIRSF Spt6 979 1089 IPR017072 GO:0032968
Vifa5g02158 1638 FunFam Transcription elongation factor spt6 1225 1336 - -
Vifa5g02158 1638 Gene3D SH2 domain 1337 1433 IPR036860 -
Vifa5g02158 1638 MobiDBLite consensus disorder prediction 137 161 - -
Vifa5g02158 1638 MobiDBLite consensus disorder prediction 1195 1219 - -
Vifa5g02158 1638 MobiDBLite consensus disorder prediction 1446 1638 - -
Vifa5g02158 1638 Coils Coil 55 78 - -
Vifa5g02158 1638 MobiDBLite consensus disorder prediction 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02158 Vifa-Chr5 717621572 717630698 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02158 K11292 - gmx:100809136 2348.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02158 5 717621572 717630698 Vifa5g02158 5 717621572 717630698 ECH