Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02095 ATGGCGCTATCATCTTCATCATCGCCATGTTCATGCTTTTCAGCTCCTACTACAACACTTGTTCCTCCTACACGCCTTTTCACTACTCAATTCCACAGCAACACCAAACCCTACATCCGTTTCCGGCGAACAATTGCCGCCACCGCCACCGATTCCACTCCGCCACTCTACTCTACCACCAGAAAAGGGCTTGACGGCGTCAACATCGCCGAAGATGTCACTCAGTTGATTGGAAATACACCGATGATATATCTGAACAAAGTTACAGAGGGATCTGAAGCAAAGGTTGCTGCAAAACTTGAATCAATGGAGCCTTGCAGAAGTGTCAAGGACAGAATTGGCTATAGTATGTTATGTGATGCCGAAGAGAATGGAGCAATTACGCCCGGAAAGACTGTTTTAGTTGAACCAACAACTGGAAATACCGGACTTGGCCTTGCTTTTGTTGCAGCAACTAAGGGGTATAAACTGATAGTCACAATGCCTGCCTCCGTTAATATTGAGAAGAGAATTCTTTTACGCTCGTTTGGTGCAGAGATTGTGTTGACTGATGCAGAGAAAGGGCTGAAAGGGGCTGTTGACAAAGCCAAAGAAATTGTCAACGCCACACCCGATACTTACATGTTTCGGCAGTTTGAAAACAGTAATAATGCAAAGATCCACTTCAAAACTACAGGGCCAGAGATATGGAAGGATACCAAGGGTAAAGTTGATATATTGGTGGCTTCTATTGGAACTGGCGGCACTATTGAAGGGACTGGAAGTTATCTAAAATCGATGAACACTAACATAAAGGTGGTTGGGGTGGGACCTGCGGATGGAAGTATAGTCTATACAAGTACAATCGTAGGAGACAATCCAGGTTCCGTATCAAGCATTTTGGATGTCAAACTACTTGATGAGGTCATTAAGGTTACCAATGCTGAATCTAATGAAATGGCAAGGAAATTAGCATTGGAAGAAGGATTACTGGTTGGGATTTCTTCAGGAACTGCGGCAGCAGCTGCCATAACTTTGGCAAAACGGCCTGAAAATAATGGAAAACTTATAGCGGTTATATTTCCTAGTTTTGGTGAGAGGTATCTTAGTACTCCCCTCTTCAGTTCCATCTATGAAGAGGCTCAGAGAATGTAA 1134 0.4383 MALSSSSSPCSCFSAPTTTLVPPTRLFTTQFHSNTKPYIRFRRTIAATATDSTPPLYSTTRKGLDGVNIAEDVTQLIGNTPMIYLNKVTEGSEAKVAAKLESMEPCRSVKDRIGYSMLCDAEENGAITPGKTVLVEPTTGNTGLGLAFVAATKGYKLIVTMPASVNIEKRILLRSFGAEIVLTDAEKGLKGAVDKAKEIVNATPDTYMFRQFENSNNAKIHFKTTGPEIWKDTKGKVDILVASIGTGGTIEGTGSYLKSMNTNIKVVGVGPADGSIVYTSTIVGDNPGSVSSILDVKLLDEVIKVTNAESNEMARKLALEEGLLVGISSGTAAAAAITLAKRPENNGKLIAVIFPSFGERYLSTPLFSSIYEEAQRM 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02095 377 Gene3D - 75 363 IPR036052 -
Vifa5g02095 377 CDD CBS_like 78 363 - -
Vifa5g02095 377 NCBIfam cysteine synthase A 74 367 IPR005859 GO:0004124|GO:0006535
Vifa5g02095 377 FunFam Cysteine synthase 104 181 - -
Vifa5g02095 377 Pfam Pyridoxal-phosphate dependent enzyme 73 354 IPR001926 -
Vifa5g02095 377 FunFam Cysteine synthase 182 363 - -
Vifa5g02095 377 NCBIfam cysteine synthase 74 367 IPR005856 GO:0004124|GO:0006535
Vifa5g02095 377 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 99 117 IPR001216 GO:0006535
Vifa5g02095 377 Gene3D - 111 213 IPR036052 -
Vifa5g02095 377 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 69 370 IPR036052 -
Vifa5g02095 377 PANTHER CYSTATHIONINE BETA-SYNTHASE 69 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02095 Vifa-Chr5 695380720 695389314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02095 67 377 Miscellaneous Gene Families AT3G03630 72.990 5.79e-150 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02095 K22846 - gmx:100816974 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02095 5 695380720 695389314 Vifa5g02095 5 695380720 695389314 ECH