Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02090 ATGTCGTCCCTGGCAGTTTCCTCTTCTCCAAAAAAATGGATGAGAAATTGTATTATAGTTCTCAACTCATTCATATGTTACGTTGTGTTCCTCTTCTTTGATTTTCTAGATGCTCTCTTATGCGTTATCTATAGATACCTCGATGAGCGCATTGAAGGGGTGGCATCTCCTTGTTGTTGCTCTAAATGGGAGAGACAGAACAAGATTATAATGAAAGATGAAGATGATGGTCTTTCAGATAGTTTGTATCAGAGGAAGAACGTGTTTAGAGAAATGGGTTTGCTTCAATTTGGGAGAAAAAAGGAATATTCTAATGGAAAATGCGGTGGAATGAAAGTGAGTAGTTGGTCTGATTGTGGGTGTGAGTCTTGTCTTTCATGGATGAATGGTGATGATGATGACTATAAACTTCACTTTGTTGTTAAGGAACCCTTAATAGCCACTGGTGAAATTTGCAGGGGAGAGCCTTACGAGAATGTGATATTCTTGCATGGATTTATAAGTTCTTCCTCATTTTGGACACAGACAGTGTTTCCATGTTTCTCTGAAAATGTAAATCATAACTACAGATTGATTGCCATAGACCTGTTGGGGTTCGGAAAGAGTCCTAAGCCAAGAGATTGTTTGTACACTTTGAAGGATCATGTGGAAATGATTGAGAAATCTGTGGTTCAACCATTGGAGTTAGGTAGTTTTCATCTGGTTGCACATTCTATGGGGAGTGTAATTGCATTGGCTTTGGCTGCAAAGTACCCTAATTCTGTAAAATCAATTACCCTTGTGGCACCTCCATACTCTTCTTTTGACGAAAATGATGCTTGTTTAAAAGCACTTGAAAAGTTTGTTGGAAAGAAATTGTGGCCAATGTTGTCAGCAGGTTCTTCATTCATGTCATGGTATGAGCATTTGAGTCGAACTGTTTGCCTTATCTATTGCAGAAATCACAGGTTATGGGAGAGGATTCTAAAATTTGTTACCCAAAAGAGGGATCTAAGTTTTTTGATCACAGACATGACAAGACATACTCATCAATCTGCTTGGAATTCCATGCATAATGTGATATGTGGAGGAACAAAATTCATGGGCAGTTACTTGAAAATTTTAACAAAAAGTGGAGTTAGAATAAATGTTATACAAGGTGATAGAGATCAAGTTGTCCCAATGGAGTGCATCAGTGAGTTAAAGTTGAAGGCTCCAAATGTTGAAATTAACATAATTCCGAATGCTGATCATAGCTCTGTCCTATTAGGCAGAGAGAAGAAATTCGCACAAAGTTTGGAGCATACATGGACCTCTTCTTGTTGA 1305 0.3808 MSSLAVSSSPKKWMRNCIIVLNSFICYVVFLFFDFLDALLCVIYRYLDERIEGVASPCCCSKWERQNKIIMKDEDDGLSDSLYQRKNVFREMGLLQFGRKKEYSNGKCGGMKVSSWSDCGCESCLSWMNGDDDDYKLHFVVKEPLIATGEICRGEPYENVIFLHGFISSSSFWTQTVFPCFSENVNHNYRLIAIDLLGFGKSPKPRDCLYTLKDHVEMIEKSVVQPLELGSFHLVAHSMGSVIALALAAKYPNSVKSITLVAPPYSSFDENDACLKALEKFVGKKLWPMLSAGSSFMSWYEHLSRTVCLIYCRNHRLWERILKFVTQKRDLSFLITDMTRHTHQSAWNSMHNVICGGTKFMGSYLKILTKSGVRINVIQGDRDQVVPMECISELKLKAPNVEINIIPNADHSSVLLGREKKFAQSLEHTWTSSC 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02090 434 PRINTS Alpha/beta hydrolase fold signature 234 247 IPR000073 -
Vifa5g02090 434 PRINTS Alpha/beta hydrolase fold signature 248 261 IPR000073 -
Vifa5g02090 434 PRINTS Alpha/beta hydrolase fold signature 188 203 IPR000073 -
Vifa5g02090 434 SUPERFAMILY alpha/beta-Hydrolases 133 414 IPR029058 -
Vifa5g02090 434 Gene3D alpha/beta hydrolase 131 432 IPR029058 -
Vifa5g02090 434 Pfam alpha/beta hydrolase fold 160 271 IPR000073 -
Vifa5g02090 434 PANTHER HYDROLASE 134 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02090 Vifa-Chr5 693775380 693777301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02090 20 432 Acyl Lipid Metabolism Gene Families AT5G17780 48.210 4.12e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02090 - - gmx:100775258 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02090 5 693775380 693777301 Vifa5g02090 5 693775380 693777301 ECH