Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02089 ATGGGCGCCGCCGCCCCAAGGTTGATCTTCATCCTCCGCCACAACCTCCGCCTCCTCCCTCTCTCCTTCTCTTCCCATTTCCGCCACCATCACCGCACTATCCTTTCTTCCACTTCCTCTCCCTTTTCCTCACTCACTCCTTCTCTCACACACAAACTCAAACTCAAACTCAAACCCAAGGCCTCCCAACATTTTCACACCCAACCTTCATCTTCCCATAGTGGGACCCACCCATGGCCCGAATTCACCAGATTTCTCGCACACATCTCCTCCGCCGGCTACACATCCACAATTCCTCTCGCCGATTCCTTTATTCCTCCTGCCGAATTATCGCAGGCCGAGGTCAGTTCCTGCTTGGCTTTCGCTCGAGATAGACCCAACCTTCTCAGGTTGCTTTCTATGAGAGACGTTGCGGTTGTGGTTGAACATGCTACTCCCTTTCTGTTCCCAGACTCTGAGGATTCCGTTTCCAAGATGAAGTCTTTTGTATCCAACGGCGATTCCACTGCCTTGGACACTAATAAAGCAAATATGGTTGATCTAATGAAATTTTTGCTGAGTTATGCAAGCAACTGCTCAGTCTCTTCAGAAAGGAACAGTCTCTATAACAGAAATCTTGTTGAATCCTCCATCAGAAACCTATTTGGTGAACTTTTCAAGCTGAGTTATAGTACACCTGGACCTAACTCTTTTGATTCAGTGCAAAATCAAATGCCTGGCAGTAGACTTGGGCATACGTTGCCTCCTGGACAAAACATTGAAATGAAAAGGGGTGATTGGATTTGCACAAGGTGTAATTTTATGAATTTTGCAAGAAATGTTAAATGTCTTGAATGCGAGGAAGCAAGGCCAAAAAGACAACTGACTGGAGGAGAATGGGAATGTCCTCAGTGTGATTTTCATAATTATGGGAGGAATGTAACTTGCTTACGGTGTGATTGCAAGCGGCCTGGACAAATATCTTTGGGTGCCAGCAATAATACGTCACATCCAGGTGTAGCAGACGATGAAGATTTTCCGGAAATAATGCCTTTAAGGAAAGGAGTTAATAGATTTGTTGTAAGCACAAGGAAAACTCCATTAGAGAGGAGGTTGACCAATGCTCAATACAAGAGAAACCTGGGAAATAACGACACTCTCGGAGTGGAGGATTTTAGATCTGGGGAATCAGTCAAGTCCCACAATATGCTGGATGATATTCTAGGTCGTTCAACTGGAATTCATCAATATGACTATAAAAATATGGGTGTTGAACAAAATTTTAGTAGAGAAAGCTCACCTTCAATTGCTAGCAATACTTCCAATTTCAACGATGCTAAAGGAAGCAACACTACTACCCTTCCCCCCTTTCCATCATATGCCAGTTCTGGTGACACTGACAGTACACAACTTTCTAATAACTCTTCAAGTGAAAATAGCATTAAGGATAAGGAGAAAGAGCAAGCTGAAAAATCTGATAGATGGTTTAGAAAGATCGCAGAGCTGAATGATGTTCCAGATATAACAAGTGCAATATCCGATGATGATTTCCCTGAAATAATGCCGATGCGTAAAGGAGAAAACAGATTTGTTGTTAGCAAGAAAAAAGACCGGTCCTTGACAACACCGACATATAAGAGACGTTTGGCCATGGAGCAATCTGGCAATACCAACTTTGTCCCTTTTGTACCCTTCCCACCAGATTACTTTGCCAAAAAGGACAAGCCACAGGCGGATGGAACACACTCAACAGATAAGTCCAATGTTGAATCATCCTCAATACCTGAACCGGCTGAGACGTCAAGTGACACTAGAGCTAGACCTGAACAGAGGCCAGAACCTTCTTCTGATCATAGTTTAAATAATAATAATAATCATGTTAGCTCTAGCTATGGGGCTACAAGTAGTGGAAATTCAAACCAGGGTTTTAGTCTAGATAGTAATTCGAATTTGACAGAGAAGTCATCCGCAGGCTCGGCATCTGAGAACCAGAGTGTTGGAACAGAATGGACAGGGAAGAGTTTAGAGGGGTCGGCGGTCAGGGAACCTGATCCTTTGGACATGTCAGAGGAGGCGAAAGCAGAGAGGTGGTTTCGTCGTGTTGCACAGATAAAGGATATCTCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCCTCAATAATGCCCATGCGTAAAGGGGTGAACAGATTTGTTGTGAGTAAGAGGAAAACACCATTGGAAAGGAGATTGACATCTCAGCAGTACAGAAGAAATCTTCCAGTTGTGAGCTCAGATCCTGTTAAGAGAGAAAATGAAGGTAGCTGA 2286 0.4383 MGAAAPRLIFILRHNLRLLPLSFSSHFRHHHRTILSSTSSPFSSLTPSLTHKLKLKLKPKASQHFHTQPSSSHSGTHPWPEFTRFLAHISSAGYTSTIPLADSFIPPAELSQAEVSSCLAFARDRPNLLRLLSMRDVAVVVEHATPFLFPDSEDSVSKMKSFVSNGDSTALDTNKANMVDLMKFLLSYASNCSVSSERNSLYNRNLVESSIRNLFGELFKLSYSTPGPNSFDSVQNQMPGSRLGHTLPPGQNIEMKRGDWICTRCNFMNFARNVKCLECEEARPKRQLTGGEWECPQCDFHNYGRNVTCLRCDCKRPGQISLGASNNTSHPGVADDEDFPEIMPLRKGVNRFVVSTRKTPLERRLTNAQYKRNLGNNDTLGVEDFRSGESVKSHNMLDDILGRSTGIHQYDYKNMGVEQNFSRESSPSIASNTSNFNDAKGSNTTTLPPFPSYASSGDTDSTQLSNNSSSENSIKDKEKEQAEKSDRWFRKIAELNDVPDITSAISDDDFPEIMPMRKGENRFVVSKKKDRSLTTPTYKRRLAMEQSGNTNFVPFVPFPPDYFAKKDKPQADGTHSTDKSNVESSSIPEPAETSSDTRARPEQRPEPSSDHSLNNNNNHVSSSYGATSSGNSNQGFSLDSNSNLTEKSSAGSASENQSVGTEWTGKSLEGSAVREPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYRRNLPVVSSDPVKRENEGS 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02089 761 ProSiteProfiles Zinc finger RanBP2 type profile. 256 285 IPR001876 -
Vifa5g02089 761 MobiDBLite consensus disorder prediction 575 593 - -
Vifa5g02089 761 PANTHER ZINC FINGER PROTEIN 36 376 - -
Vifa5g02089 761 MobiDBLite consensus disorder prediction 421 485 - -
Vifa5g02089 761 ProSitePatterns Zinc finger RanBP2-type signature. 260 279 IPR001876 -
Vifa5g02089 761 MobiDBLite consensus disorder prediction 563 682 - -
Vifa5g02089 761 Gene3D - 287 319 - -
Vifa5g02089 761 Gene3D - 249 286 - -
Vifa5g02089 761 ProSiteProfiles Zinc finger RanBP2 type profile. 289 318 IPR001876 -
Vifa5g02089 761 Pfam Zn-finger in Ran binding protein and others 257 284 IPR001876 -
Vifa5g02089 761 Pfam Zn-finger in Ran binding protein and others 291 317 IPR001876 -
Vifa5g02089 761 ProSitePatterns Zinc finger RanBP2-type signature. 293 312 IPR001876 -
Vifa5g02089 761 MobiDBLite consensus disorder prediction 738 761 - -
Vifa5g02089 761 MobiDBLite consensus disorder prediction 608 665 - -
Vifa5g02089 761 SMART zf_4 291 315 IPR001876 -
Vifa5g02089 761 SMART zf_4 258 282 IPR001876 -
Vifa5g02089 761 MobiDBLite consensus disorder prediction 421 471 - -
Vifa5g02089 761 SUPERFAMILY Ran binding protein zinc finger-like 251 285 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02089 Vifa-Chr5 693769010 693773260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02089 76 322 EF-hand Containing Proteins AT1G55040 32.107 2.44e-36 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02089 - - gmx:100775801 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02089 5 693769010 693773260 Vifa5g02089 5 693769010 693773260 ECH