Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02088 ATGGTCTCCAAGGTGATTTTGCAGAAAAGGCTCTTCAGGTTCTTGCAACTGTCACCATCCTTCTTATGCTCCTTTTTATCTTCGTCTTCTATTAATGGGTCTCCATTCCATTCTGTGAAAGCAACCGAAATATTGGGTCATTCAACTTCTTTTAGAAGCTTCTGCTCCCAAAAGTCCAATCTTAGTGTTGAATCTCATGGCCCCGCACCTATTGATTACAGTTCGCTACTGCAGGAGGCTGAATTCCATAGACTGGCTGAGTCCACAATACAAGGCCTTCAAGAGAAATTTGAGGATTATGGAGACTCTATTGACCTTGATGGATTTGACATAGACTATGGGAATGATGTTTTGACTGTCAAACTCGGAGATCTGGGCACCTATGTATTGAACAAACAGACACCAAATAGACAACTTTGGCTGTCTTCGCCAGTGAGTGGTCCGTCTAGGTTTGATTGGGATCAGGATACTAAAGCTTGGATTTATAGGCGGAACAAAGCAAAGTTATATAAAATTTTAGAAGATGAGTTGGAGCAGCTGTGTGGCAAACCTATTGTTCTTACCTAA 567 0.4162 MVSKVILQKRLFRFLQLSPSFLCSFLSSSSINGSPFHSVKATEILGHSTSFRSFCSQKSNLSVESHGPAPIDYSSLLQEAEFHRLAESTIQGLQEKFEDYGDSIDLDGFDIDYGNDVLTVKLGDLGTYVLNKQTPNRQLWLSSPVSGPSRFDWDQDTKAWIYRRNKAKLYKILEDELEQLCGKPIVLT 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02088 188 PRINTS Frataxin signature 130 145 IPR002908 GO:0008199|GO:0016226
Vifa5g02088 188 PRINTS Frataxin signature 77 95 IPR002908 GO:0008199|GO:0016226
Vifa5g02088 188 PRINTS Frataxin signature 115 130 IPR002908 GO:0008199|GO:0016226
Vifa5g02088 188 ProSiteProfiles Frataxin family profile. 77 185 IPR002908 GO:0008199|GO:0016226
Vifa5g02088 188 Pfam Frataxin-like domain 77 184 IPR002908 GO:0008199|GO:0016226
Vifa5g02088 188 ProSitePatterns Frataxin family signature. 129 143 IPR020895 -
Vifa5g02088 188 Gene3D Frataxin/CyaY 71 188 IPR036524 GO:0008199|GO:0016226
Vifa5g02088 188 FunFam Frataxin, mitochondrial 70 188 - -
Vifa5g02088 188 NCBIfam iron donor protein CyaY 79 186 IPR002908 GO:0008199|GO:0016226
Vifa5g02088 188 PANTHER FRATAXIN 47 187 IPR002908 GO:0008199|GO:0016226
Vifa5g02088 188 CDD Frataxin 77 185 - -
Vifa5g02088 188 SMART Frataxin_Cyay_2 77 188 IPR002908 GO:0008199|GO:0016226
Vifa5g02088 188 SUPERFAMILY Frataxin/Nqo15-like 67 185 IPR036524 GO:0008199|GO:0016226
Vifa5g02088 188 NCBIfam frataxin 81 178 IPR017789 GO:0004322|GO:0005739|GO:0006879|GO:0018283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02088 K19054 - gmx:100815916 254.218