Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02060 ATGCTAGCATGTACTAACAGTATCTTCCATGGCCCTGCCACAACATTCCACCGCCAATCCCAGCCTTCTAAAATCCTTCTCTCCAAGCCTCTCCTCTCCTCTCGCCTCCCTCGCGCAGTCAATTTCGGGAAATTAAAGTTCCATTCTCCGTTTTCCGGAGAGAATGGTTCCCGCCGTTTCGATGTTAAATCTTCGGTCAATTCATCGTCAGAAGTTTTGGAGTCCATTGATATCGGTGTCCCGCACAGTTCCCTGCAAAAGCATTCCGTGAAGATTCCAGTGGGTGATAGACATATTTTGGTTGAGACTGGTCACATGGGAAGGCAAGCAAGTGGTTCTGTTACAGTTACGGATGGGGATACTATTGTGTACACCACTGTTTGTTTGAATGATACTCCTAGTGAGCCATCCGATTTTTTCCCCCTTTCTGTGAATTATCAAGAGCGCTTTTCAGCTGCTGGTCGTACTAGTGGAGGTTTCTTCAAACGAGAAGGAAAAACCAAGGATCACGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTGCGTCCTACTATGCCTAAGGGCTTCTACCATGAAACTCAAATATTATCTTGGGTTTTAAGCTATGATGGGTCTCATGCCCCCGATTCCTTGGCCATCACTGCTGCTGGTATAGCACTTGCACTTTCAGAAATTCCTGTGTCAAAAGCAGTTGCTGGAGTTCGAGTTGGCCTCATTGGTGATAAGTATATAGTAAATCCTACAACTGAGGAGATGGAAAACTCTGAGTTGGACCTCATGCTGGCGGGCACAGATAGTGCAATATTGATGATAGAGGGTTATGGCAATTTTCTTCCAGAAGAGAAGCTACTTAAAGCTGTAGAAATTGGTCAGGATGCAGTGCGAGCAATCTGCAATGAGGTAGAAGCCTTGGTCAAGAAATGTGGGAAGCCAAAGATGATTGATGCCATCAAGTTGCCTCCTCCCGAGCTTTATAAACATGTTGAGGAAATCGCTGGTGATGACTTGATAAAAGTTCTTCAAATTAGAAATAAAATACCGAGAAGGAAAGCCCTTTCATCATTGGAAGAAAGGGTTCTTAAGATACTGACAGAAAATGGGTTTGTCGTTGATGAATCGGCACCAAGGAGTAATGCTGAAACCATCGCAGAGATTATTGAGGATGTGGATGAAGATGAGGAAGTAATTGTTGATGGTGAAGTTGATGAAGGCGATGTTCATATAAAGCCAACTCCACGCAAACCAACTCCTTTATTTTCTGAGGTAGATGTGAAGTTGGTATTTAAAGAAGTTACGTCCAAGTTTTTGAGGAAACGTATAGTAGAGGGTGGGAAAAGGAGTGATGGGAGAACACCAAAAGAAATCCGCCCAATTAACTCAAGTTGTAGCGTATTACCTAGAGCACATGGAAGTGCTCTTTTTACGAGGGGTGAAACACAGGCACTGGCTGTTGCTACGCTTGGAGATAACAAGATGGCACAACGAATAGACAATCTTATAGAAGTTGATGATTATAAGAGGTTCTATCTGCAGTATTCGTTTCCTCCTTCATGTGTTGGGGAGGCAGGCCGTATTGGTGCACCGAGTAGAAGAGAAATTGGTCACGGAATGCTTGCTGAGAGATCCCTTGAAACAATTTTGCCTTCTGATAATGACTTCCCTTACACTATTCGTGTTGAAAGTACCATCACAGAGAGCAATGGCTCTTCGAGCATGGCGTCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATCAAGTGCTCAATTGCTGGAATTGCTATGGGTTTGGTTCTTGATACCAAGGAATTTGGTGGAGATGGAACTCCGCTTATTCTATCTGACATAACTGGATCTGAAGATGCATCTGGAGATATGGATTTTAAGGTTGCTGGGAATGAAGATGGCATAACTGCATTTCAGATGGACATTAAGGTAGCTGGAATTACTTTGCCCATAATGAGAGACGCACTGCTACAGGCAAAAGACGGCAGGAAGCATATACTTGGTAAGTTCAAAGTTGAAACACATTAG 2046 0.4365 MLACTNSIFHGPATTFHRQSQPSKILLSKPLLSSRLPRAVNFGKLKFHSPFSGENGSRRFDVKSSVNSSSEVLESIDIGVPHSSLQKHSVKIPVGDRHILVETGHMGRQASGSVTVTDGDTIVYTTVCLNDTPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGSHAPDSLAITAAGIALALSEIPVSKAVAGVRVGLIGDKYIVNPTTEEMENSELDLMLAGTDSAILMIEGYGNFLPEEKLLKAVEIGQDAVRAICNEVEALVKKCGKPKMIDAIKLPPPELYKHVEEIAGDDLIKVLQIRNKIPRRKALSSLEERVLKILTENGFVVDESAPRSNAETIAEIIEDVDEDEEVIVDGEVDEGDVHIKPTPRKPTPLFSEVDVKLVFKEVTSKFLRKRIVEGGKRSDGRTPKEIRPINSSCSVLPRAHGSALFTRGETQALAVATLGDNKMAQRIDNLIEVDDYKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLETILPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVAGITLPIMRDALLQAKDGRKHILGKFKVETH 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02060 681 CDD RNase_PH_PNPase_1 88 314 - -
Vifa5g02060 681 SUPERFAMILY Ribosomal protein S5 domain 2-like 87 227 IPR020568 -
Vifa5g02060 681 SUPERFAMILY Ribonuclease PH domain 2-like 583 675 IPR036345 -
Vifa5g02060 681 CDD RNase_PH_PNPase_2 455 675 - -
Vifa5g02060 681 FunFam Polyribonucleotide nucleotidyltransferase 86 316 - -
Vifa5g02060 681 Pfam 3' exoribonuclease family, domain 1 455 589 IPR001247 -
Vifa5g02060 681 Pfam 3' exoribonuclease family, domain 1 97 227 IPR001247 -
Vifa5g02060 681 Gene3D - 404 680 IPR027408 -
Vifa5g02060 681 FunFam Polyribonucleotide nucleotidyltransferase 393 680 - -
Vifa5g02060 681 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 322 452 IPR036456 GO:0003723|GO:0006396
Vifa5g02060 681 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 77 677 IPR012162 GO:0003723|GO:0004654|GO:0006402
Vifa5g02060 681 Pfam 3' exoribonuclease family, domain 2 231 293 IPR015847 -
Vifa5g02060 681 SUPERFAMILY Ribosomal protein S5 domain 2-like 428 625 IPR020568 -
Vifa5g02060 681 PIRSF PNPase 84 680 IPR012162 GO:0003723|GO:0004654|GO:0006402
Vifa5g02060 681 SUPERFAMILY Ribonuclease PH domain 2-like 230 314 IPR036345 -
Vifa5g02060 681 Gene3D - 84 311 IPR027408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02060 Vifa-Chr5 682271451 682290791 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02060 K00962 - gmx:100819741 1052.74