Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02056 ATGAGCATTCTCTCTTTCCGAACAAGCTCCCGTTCCGTAACCGAAACCGTAAACGGTTCACACAAATTCGTAATCAAGGGCTACTCACTCGCAAAAGGAATGGGAGTCGGAAAACACATAGCCAGCGAAACCTTCACAGTCGGCGGTTACCAATGGGCAATTTACTTCTATCCCGACGGTAAAAACCCCGAGGATAATTCCGCGTATGTTTCCGTTTTTATCGCGCTTGCTTCCGAAGGAACCGATGTTCGTGCTCTCTTTGAACTCACTCTGCTTGATCAGAGTCCCAATGGAAAGCATAAGGTTCATAGTCACTTTGATCGATCTCTTGAGAGTGGGCCTTATACTCTCAAGTATAGAGGCAGCATGTGGGGATATAAGCGGTTTTTCAAACGTGCGCAACTCGAGGCGTCATCCTTTCTTAAGGATGACTGCTTGAAGATAAATTGCACTGTTGGTGTTGTTGTGTCGTCCATAGATTGTTCTAAATTGACTACCATACATGTTCCTGAATCTGATATTGGATCGCATTTCGGCATGCTGTTAGAGAATGAGGAAGGATCTGATGTTACTTTCTCTGTTGGCGGAGAAAGGTTTCACGCGCATAAACTTGTTATGGCAGCTCGGTCAACTGCATTTGAAACCGAGTTTTTTAATAGGATGGAGGAAGATGATTGTGATATTGTTGTTACGGACATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACGCACTTATAGAAGATGAAGAGTTCTTCATGTCAGATATATCTATAGATTCGGTTGCCTATATTCTGGCTCTTGCCGATCGTCATCATGCTACGGAGTTAAAGTCCATCTGTCTACAATTTTCAGCTGAAAACCTTATTGCTGTGATGCAGTCTGATGGTTTTGAGTATCTAAAGGAAAACTGTCCGTTGCTGCAATCAGAACTGCTCAAGACAGTTGCAGGAGGGGACGAGGAGTTTAGTGGAGAAGGAAAATGCCGAAGTGTATGGGCCCAAGTTTCCGACGGTGGTGAGACTAATGATAGGAGTGTAAGACAACAAACCTGGGAAAACGGAGTTGAAAGAGGTCAGAGCTTATGGGTTAACCTTTCTGACGGTGTAAACAATGATAGGAGTCCAGGGCAAGAAGCTTGA 1155 0.439 MSILSFRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSPNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLTTIHVPESDIGSHFGMLLENEEGSDVTFSVGGERFHAHKLVMAARSTAFETEFFNRMEEDDCDIVVTDMEPKVFKALLHFIYRDALIEDEEFFMSDISIDSVAYILALADRHHATELKSICLQFSAENLIAVMQSDGFEYLKENCPLLQSELLKTVAGGDEEFSGEGKCRSVWAQVSDGGETNDRSVRQQTWENGVERGQSLWVNLSDGVNNDRSPGQEA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02056 384 Gene3D Potassium Channel Kv1.1; Chain A 156 309 IPR011333 -
Vifa5g02056 384 SMART math_3 23 135 IPR002083 GO:0005515
Vifa5g02056 384 FunFam BTB/POZ and MATH domain-containing protein 4 17 156 - -
Vifa5g02056 384 SUPERFAMILY POZ domain 166 288 IPR011333 -
Vifa5g02056 384 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 9 317 IPR045005 GO:0016567
Vifa5g02056 384 CDD BACK_AtBPM-like 260 319 IPR034090 -
Vifa5g02056 384 SUPERFAMILY TRAF domain-like 15 154 - -
Vifa5g02056 384 MobiDBLite consensus disorder prediction 342 362 - -
Vifa5g02056 384 SMART BTB_4 188 293 IPR000210 GO:0005515
Vifa5g02056 384 CDD MATH 19 152 IPR002083 GO:0005515
Vifa5g02056 384 Pfam BTB/POZ domain 180 291 IPR000210 GO:0005515
Vifa5g02056 384 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 17 155 IPR008974 GO:0005515
Vifa5g02056 384 ProSiteProfiles MATH/TRAF domain profile. 18 152 IPR002083 GO:0005515
Vifa5g02056 384 ProSiteProfiles BTB domain profile. 188 254 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02056 Vifa-Chr5 680683090 680689611 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02056 K10523 - gmx:100809683 678.322