Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02050 ATGAAGGTCGTCGCACTAGTTAGCGGCGGCAAAGACAGTTGCTACGCCATGATGAAGTCTATTCACTACGGCCACGAGATTGTTGCGTTGGCGAATTTGATGCCTGTTGATGATTCCGTCGACGAGCTCGATAGCTACATGTTCCAAACGGTTGGGCATCAAATTATCATCAATTATGCCGAATGTATGGGATTGCCGTTGTTTAGGAGGCGAATACAAGGATCCTCAAGGCATCTAGAGCTTGGTTATAAAACAACTCAAGGTGATGAAGTTGAAGATATGTATATTTTATTACGTGAAGTGAAAAGGCAGATACCCTCAGTTACTGCTGTGTGTTCTGGAGCCATTGCATCTGACTATCAGAGACTGCGGGTGGAAAGTGTATGTTCAAGGTTAGGCCTTGTTTCTCTTGCATACTTATGGAAACAAGATCAGTCCTTGCTCCTCAATGAAATGATTGCAAATGGAATAGTAGCTATAACTGTGAAGGTAGCTGCCATGGGTTTGGATCCTGCGAAGCACTTGGGTAAAGAATTAGCCATGTTAAATGCTTATTTGCATAAATTGAAAGAGGCGTATGGAATCAATGTTTGTGGTGAAGGAGGCGAGTATGAAACATTGACCCTAGATTGCCCGCTCTTTAGTAATGCTCGCATTGTGCTTGACAAATATCAAATTGTGATGCACTCTTCAGACTCCATAGCTCCCGTGGGAGTCCTTCATCCTTTGGCATTTCATTTGGAAAATAAGGTAGACACTCAGTCTTTAAAAACAGTAGACAAAATACATGAGAGTTGTACGCAGACAGTAGGACCCGTGTTCGAAGTGCATGACAGTCTAGAAAGATTGGAAGCCACATGTTGCTGGTTACAAGATTCATGCAATGGTTTGCGGGAAGATTTAACAATTGTTTTGAGAAAAATTGAATCACAACTAGAAGGCTTTGGTTTTGGCTGGGAGAATGTTCTCTATATTCATCTTTACATTGATGACATGGATAAGTTCTCTGAGGCAAATGAGACATATGTGAAGTTTATTACACATGAGAAGTGTCCATTTGGCGTCCCATCCCGTAGTACAGTTGAAATGCCTCTAGTCGAAATGGATTTTAGTAGAGCATATATGGAAGTTTTGGTATCAAATAATAAAGATAAAAAGGTTTTACATGTACAAAGTATTTCCTGTTGGGCACCTAGTTGCATTGGGCCATACAGCCAGGCAACCTTACATGAGGGTGTACTTCTCATGGCTGGTCAACTCGGGCTTGACCCTCCTACAATGAATCTTTGCAGTGGAGGCCCTGGGGTTGAACATGAACAGGCTCTAAAAAACAGCGAAGCAATAGCAAAATCTTTTAATTGTTCAATATCGACGTCTGCAATTGGTTTTGTTATTTACTGTTCTAAAAAAGTTTCTTCATTGGATAGACTCGATATCGAGAAGAAACAAGAAACAATCCTAAGACAAATGAAGATATCTGATTTACAGGAAGGCAAGAAGTTCAAAGCATTAGAACCCATAACCCTCTATGTCCTTGTTCCTGATCTACCTAAAAGAGCATTTGTAGAAGTGAAGCCTATTCTTTATGTCGAGGATGGTGCAGATGCAGCAATTGAGACCATAACAGAAAAACCTCGTTCAAAGACATCATGTTATTGGGGTTTCAAGCAAGAAAATTGGCACGACTCTTGCATTCAGAAATGTGTGATTCCTGGGAGGATATGTGCCATTATATCATCTATCACAAGTGAGCTTGCTGCAAAGATATGTTCTGATTCCCTGCCTGCTGATTATGTCAATGATAATGGTCAACATTCTCTTCCTAAAGCACATATGGAGCAGTTATCAAAGTTCTGCATTTATCTTCTTGACAAAGCTATAAAAGATAACAACTTTGCCTGGGAAGATATAATGAGTTTGAGGTTCTACATCCCGGTAAGCCTTCAAATGTCAGTCGAGATAATACAACCTATGTTCAGCAATGCACTTTTTGAACTCTCTGAAATGAATCAAAGGAAAGTTAAAAGTTATGAGGAGCCGATCTTCAACATAGTTCCCGTCATAGGTGCTGGGCGGTCTGCTTCATCCATGGACAATGTAGTGACCTGTGAATTACTAGCTCATAAATCCTGA 2133 0.406 MKVVALVSGGKDSCYAMMKSIHYGHEIVALANLMPVDDSVDELDSYMFQTVGHQIIINYAECMGLPLFRRRIQGSSRHLELGYKTTQGDEVEDMYILLREVKRQIPSVTAVCSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLNEMIANGIVAITVKVAAMGLDPAKHLGKELAMLNAYLHKLKEAYGINVCGEGGEYETLTLDCPLFSNARIVLDKYQIVMHSSDSIAPVGVLHPLAFHLENKVDTQSLKTVDKIHESCTQTVGPVFEVHDSLERLEATCCWLQDSCNGLREDLTIVLRKIESQLEGFGFGWENVLYIHLYIDDMDKFSEANETYVKFITHEKCPFGVPSRSTVEMPLVEMDFSRAYMEVLVSNNKDKKVLHVQSISCWAPSCIGPYSQATLHEGVLLMAGQLGLDPPTMNLCSGGPGVEHEQALKNSEAIAKSFNCSISTSAIGFVIYCSKKVSSLDRLDIEKKQETILRQMKISDLQEGKKFKALEPITLYVLVPDLPKRAFVEVKPILYVEDGADAAIETITEKPRSKTSCYWGFKQENWHDSCIQKCVIPGRICAIISSITSELAAKICSDSLPADYVNDNGQHSLPKAHMEQLSKFCIYLLDKAIKDNNFAWEDIMSLRFYIPVSLQMSVEIIQPMFSNALFELSEMNQRKVKSYEEPIFNIVPVIGAGRSASSMDNVVTCELLAHKS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02050 710 Pfam Endoribonuclease L-PSP 397 526 IPR006175 -
Vifa5g02050 710 Pfam Endoribonuclease L-PSP 298 369 IPR006175 -
Vifa5g02050 710 Gene3D - 278 378 IPR035959 -
Vifa5g02050 710 Pfam Diphthamide synthase 1 231 IPR002761 -
Vifa5g02050 710 FunFam Diphthine--ammonia ligase 159 255 - -
Vifa5g02050 710 CDD Alpha_ANH_like_IV 2 214 IPR002761 -
Vifa5g02050 710 Gene3D HUPs 1 157 IPR014729 -
Vifa5g02050 710 CDD eu_AANH_C_2 404 528 - -
Vifa5g02050 710 Gene3D - 160 257 - -
Vifa5g02050 710 PANTHER DOMAIN OF UNKNOWN FUNCTION 71 DUF71 -CONTAINING PROTEIN 1 255 IPR030662 -
Vifa5g02050 710 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 241 - -
Vifa5g02050 710 Gene3D - 379 530 IPR035959 -
Vifa5g02050 710 SUPERFAMILY YjgF-like 295 366 IPR035959 -
Vifa5g02050 710 FunFam diphthine--ammonia ligase 1 158 - -
Vifa5g02050 710 NCBIfam diphthine--ammonia ligase 1 231 IPR002761 -
Vifa5g02050 710 SUPERFAMILY YjgF-like 386 532 IPR035959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02050 Vifa-Chr5 679136084 679140688 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02050 K06927 - gmx:100807009 1182.16