Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02028 ATGGCTCTTGATCGTGTTGCATTCATTGCAATTTCCATGGTTTTGCTTTCTTCAATTGCTATGGCAACTGATCACATTGTGGGTGACGACAAGGGTTGGACTGTTGACTTTAACTACACTCAATGGACTCAAGATAAAGTTTTTCGTGTCGGTGACAACCTTGTGTTCAATTATGACAATACAAAGCACAACATCTTCAAAGTGAATGGTACACTCTTTCAAAACTGCACTTTTCCACCAGAGAATGAAGCAATTTCCACTGGAAAAGATGTTATTCAATTGAAAACTGAAGGAAGAAAATGGTACATTTGTGGAAAAGCTAATCATTGTGTTGCTCGTCAAATGAAGCTTGTCATCACTGTTGTAGCAGACGGCGCACCTGCTCCTTCCCCTCCTCCATCTTCTGATGCTCACTCTACTGTATCGTTTGTGTTTGGGATTATCATAGCTGCTATAGTGGCCATGGCAACCATTTTTGCTTAA 483 0.4058 MALDRVAFIAISMVLLSSIAMATDHIVGDDKGWTVDFNYTQWTQDKVFRVGDNLVFNYDNTKHNIFKVNGTLFQNCTFPPENEAISTGKDVIQLKTEGRKWYICGKANHCVARQMKLVITVVADGAPAPSPPPSSDAHSTVSFVFGIIIAAIVAMATIFA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02028 160 PANTHER BLUE COPPER PROTEIN 20 133 IPR039391 GO:0009055
Vifa5g02028 160 ProSiteProfiles Phytocyanin domain profile. 23 123 IPR003245 GO:0009055
Vifa5g02028 160 SUPERFAMILY Cupredoxins 21 122 IPR008972 -
Vifa5g02028 160 FunFam Cupredoxin superfamily protein 21 126 - -
Vifa5g02028 160 CDD Phytocyanin 23 121 - -
Vifa5g02028 160 Gene3D - 20 124 IPR008972 -
Vifa5g02028 160 Pfam Plastocyanin-like domain 33 112 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02028 Vifa-Chr5 673843972 673844535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02028 4 144 Miscellaneous Gene Families AT2G32300 32.877 2.41e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02028 - - psat:127129120 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02028 5 673843972 673844535 Vifa5g02028 5 673843972 673844535 ECH