Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02022 ATGCAGACAAGTACGGTTCAAGTGAAGCAACTTTCAGATCTAGCTACTGAGAGAGAGATTTACGAATTCTTCTCGTTTTCTGGAGAAATTGAAAACATTCAGATCGTTAGAGAATATGGAAAACCAAAGACTGCATTTGTGACGTTTAAAGATCCAAAAGCACTTGAAATTGCGTTATTGTTGTCGGGAGCAACAATAGTAGACCAGATTGTGAGTATAAGTCCCGTTGAAAACTATGTCGCTAATCGTGAGATGCAAGAAGCAAGGGTGGGGGAACATGCTATAACAATTGCTCCGTCTGAAGATGCCGCATTGAATTCTGAGGAGGAGAAACCCGGTGGAAGAGTATATCTTAGTAAAGCACAAGATGTTGTTACGAATATGCTGGCAAAAGGATCAGCGATAAAACAAGATGCCGTGAACAAAGCTAAAGCATTTGATGAGAAGCATCAACTGACCGCCAATGCATCAGCAAAGAGGTTACATGTTTCGGATAAAACAATGGCAGCAATATTTGCAGCCGAGAGGAAGTTGAACGATACTGGATCAGCTGTCAAAACAAGCAGATACGTGACTGCCGGAACATCATGGCTAACGGGTGCTTTTAGCAAGGTGGCGAAAGCCGGAAACGTGGCTGGTACTAAAACTAGAGAAAAGTTTAATATGGCTGTTTCAAACTTGACAACAAAGGATACCTCATTGGTTGTATAG 711 0.4177 MQTSTVQVKQLSDLATEREIYEFFSFSGEIENIQIVREYGKPKTAFVTFKDPKALEIALLLSGATIVDQIVSISPVENYVANREMQEARVGEHAITIAPSEDAALNSEEEKPGGRVYLSKAQDVVTNMLAKGSAIKQDAVNKAKAFDEKHQLTANASAKRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLTGAFSKVAKAGNVAGTKTREKFNMAVSNLTTKDTSLVV 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02022 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Vifa5g02022 236 SUPERFAMILY RNA-binding domain, RBD 3 82 IPR035979 GO:0003676
Vifa5g02022 236 Gene3D - 1 74 IPR012677 -
Vifa5g02022 236 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 159 222 - -
Vifa5g02022 236 SMART rrm1_1 5 74 IPR000504 GO:0003723
Vifa5g02022 236 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02022 Vifa-Chr5 672765628 672768007 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02022 - - zju:107433520 330.487