Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02019 ATGGAAGTAGCTAATTGTCCACATGCACAGAAGCAGAATTTACAATCATCAGGCCGCAAAGTTAATTCTGGATCGCAAAAAGATCTGTGGCTTGTTGTGCGAGATGGATCTCTGAGTGATTTAGAGTCAGCATTAGCATCTCTAAAAAAGAGTGGTGGCAATATCAATTTGAGGAACACCTTCGGGCTGACTCCTCTTCATGTTGCAGCTTGGAGGAACCACATTCCCATTGTAAAGAGGCTTCTTGCGGCTGGTGCCGATCCTGATGCTCGAGATGGAGAATCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCTGTTGCTAGCATCCTTCTTCAGCATGGTGCTTCAATTACATTGGAGGACTCTAAATCTCGTATACCTGTAGATCTCTTATCTGGCAACGTGTTTCAGGTTTTTGGAAATGAACACGGTTCAGTTGCTACCGAGGTATTTAGTTGGGGCAGTGGTGCTAATTATCAGCTTGGAACTGGAAATGCGCATATTCAGAAGCTACCATGTAAAGTTGATTCACTTAATGGTTCGATTATTAAGCTTCTTTCTGCGGCCAAGTTCCATAGTGTGGCACTTACTGATCGTGGAGAAGTGTATACTTGGGGATTTGGAAGAGGGGGCCGTCTCGGGCATCCTGATTTTGACATACACAATGGTCAAGCTGCCGTCATCACTCCCCGCCAGGTGACTTCTGGTCTAGGTTCTCGCAGAGTTATGGCAATTGCTGCAGCTAAGCATCATACTGTTATTGCTACTCAGGGCGGCGAAGTGTTCACTTGGGGATCCAATCGAGAGGGACAGCTTGGGTACACTTCTGTTGATACACAACCCACAGCTCGTAGAGTATCTTCGCTGAAGTCAAAAATTGTTGCCGTTGCTGCAGCAAACAAGCACACTGCTGTAGTTTCTGATTTAGGTGAAGTTTTTACTTGGGGTGGCAATAGAGAGGGTCAGCTTGGTTACGGCACCTCAAACTCGGCCTCTAACTACACCCCACACGTGGTTGAATCCTTGAAGGGAAAGATCTTAATTGGAGTTTCTGCTGCAAAATATCACACAATTGTTTTAGGATCTGATGGAGAGGTATTTACCTGGGGTCACCGACTAGTTACTCCAAAACGTGTTGTGATTACTAGGAACTTAAAGAAAAGTGGAAGCACTCCTTTAAAGTTTCATCGCAAGGAACGACTTCATGTAGTTTCTATAGCGGCTGGAATGGTACACAGCATGGCTCTTACAGAAGACGGTGCATTATTTTATTGGGTCTCCTCAGATCCTGATCTTAGATGCCAGCAGTTATATGTTATGTGTGGAAGAAATATGGTGAGCATATCTGCTGGAAAGTACTGGACTGCAGCAGCTACAGCTACAGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGATAAGCCGCTTGTTGCAACTCGGATGCCTGGTGTAAAGAAGGCTACTTCAGTTTCAGTTGGTGAAACACATTTATTAATTGTGGCTTCCCTTTATCATCCTGTCTACCCTATCGACACAATTGATGGTTCTCAGAAGCTCAAGTCGAGTAACATAAATAGTATGGAAGAGTTCAATGAAGACATTTTATTTGAGGATACCGATTCCAGTAATACAATATATACAGTTCAAAATGATAATCTTAGACAGAGATCTACACCCAGCTTAAAAAGTCTTTGTGAAAAAACAGCAGCAGAGTGTCTGCTGGAGCCACGGAATGCCATACAATTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGTGAGGACATTGTCATGCGCAACCTTGATTATATATTTTCAGTTTCGACACATGCTGTAGCAAGTGCGTCACTAGATATTTTGGCGAGCCTAGAAGGGTTGTTAGACCAGAGATCATCTGAGGCATGGAGTTACCGTCGACTCCCTACTCCAACTGCTACACTCCCTGTCATCATTGACAGTGAAGAGGATAATAATGAGCTAGAGTGTCAAAGGACCTATGACAAACCCATGAAAATATCTGCACTGAAATTGGAGAAAGCTCAAAGGTCAGATTCCTTTCTACTGCCTAAGGATGATCCTGATAGTGAAATCTCCAAAGTAGTTCGAGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTCGAAGCTAAGCAGTCTAAAGGACATCTTCTCGATGACCAGCAGATGGCAAAACTTCAATCTAAGTCTGCACTCGAGAGCTCACTTGCAGAGCTAGGTGTTCCTGTCGAGACCTCACAGAATAAAGAGTCATCTTCTATACAACCAGAAGGGAAATGTAGTAAGAAAGGTAAATCATCAAAAAAACAAAGGAGAAAAAGTGGCAACAAATCAAGCATAGAGCAGACGGATGTAGAATCTGTTTATTCTAAAAGTGAAATGATCCCTGAATCTGAAGACCTGTTGGACAAGCCATCTCCTAATTCAAAGGTGGAAGAAGATATCTGCAAACATTCTACAGCAGACCAGGGTGAAAAAGATTTAGGTTTTGTTGTACAGAAGAAAGATGCTTCCGAGTTGATGAAGGGTAAGGGTCAGTCACCAAAGGTTTCCAAGAAGAAGAACAAGAAGGGTGGGCTGTCAATGTTTCTGAGTGGTGCTCTTGATGAAGTCCCAGAAGAGGTGGCTCCCCCTCCACCCACACCAAAAAATGACGGTCCTGCCTGGGGCGGTGCCAAGTTTGGGAAGGGTTTTACTTCTCTTCGTGAAATCCAGGATGAGCAGAGCAAAATAATGGGTAACAAACCACTCGGGGTTAAAGACAAGGGGGAAGATCTTTCTGATTTTGGCAGTTGTGCGAAAATAAAGTTGAGTTCATTTCTTCATTCTAGCCCGATACCTGTTGCTGCAACTCGAATTCCCCAGGCATCTGATGGAGATAAAAATACCCCTCCTTGGGCTGCTTCAGGAACCCCTCCTCAGCCATTTAAGCTGTCTTTAAGGGACATCCAAATGCAACAGGTAAAGAAACAAGCACAAGCCCTCTCCAGTAGTCCAAAGACTAAAACTGCTGGATTCACTATCACAACTGGTCAAGGCTCGCCATCTGAAGCAACTGGGATGAACCGTTGGTTCAAACCCGAAGTTGATACACCATCCTCCATTCGTTCGATTCAAATTGAGGAAAAAGCTATGAAAGACCTCAGGCGCTTCTACACCAGTGTCAAGATTGTCAAAAAGCAATGTTAA 3240 0.4392 MEVANCPHAQKQNLQSSGRKVNSGSQKDLWLVVRDGSLSDLESALASLKKSGGNINLRNTFGLTPLHVAAWRNHIPIVKRLLAAGADPDARDGESGWSSLHRALHFGHLAVASILLQHGASITLEDSKSRIPVDLLSGNVFQVFGNEHGSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLNGSIIKLLSAAKFHSVALTDRGEVYTWGFGRGGRLGHPDFDIHNGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYTSVDTQPTARRVSSLKSKIVAVAAANKHTAVVSDLGEVFTWGGNREGQLGYGTSNSASNYTPHVVESLKGKILIGVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVITRNLKKSGSTPLKFHRKERLHVVSIAAGMVHSMALTEDGALFYWVSSDPDLRCQQLYVMCGRNMVSISAGKYWTAAATATGDVYMWDGKKGKDKPLVATRMPGVKKATSVSVGETHLLIVASLYHPVYPIDTIDGSQKLKSSNINSMEEFNEDILFEDTDSSNTIYTVQNDNLRQRSTPSLKSLCEKTAAECLLEPRNAIQLLEIADSLGADDLKKYCEDIVMRNLDYIFSVSTHAVASASLDILASLEGLLDQRSSEAWSYRRLPTPTATLPVIIDSEEDNNELECQRTYDKPMKISALKLEKAQRSDSFLLPKDDPDSEISKVVRAIRKKLQQIEMLEAKQSKGHLLDDQQMAKLQSKSALESSLAELGVPVETSQNKESSSIQPEGKCSKKGKSSKKQRRKSGNKSSIEQTDVESVYSKSEMIPESEDLLDKPSPNSKVEEDICKHSTADQGEKDLGFVVQKKDASELMKGKGQSPKVSKKKNKKGGLSMFLSGALDEVPEEVAPPPPTPKNDGPAWGGAKFGKGFTSLREIQDEQSKIMGNKPLGVKDKGEDLSDFGSCAKIKLSSFLHSSPIPVAATRIPQASDGDKNTPPWAASGTPPQPFKLSLRDIQMQQVKKQAQALSSSPKTKTAGFTITTGQGSPSEATGMNRWFKPEVDTPSSIRSIQIEEKAMKDLRRFYTSVKIVKKQC 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02019 1079 MobiDBLite consensus disorder prediction 1007 1036 - -
Vifa5g02019 1079 MobiDBLite consensus disorder prediction 971 993 - -
Vifa5g02019 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 424 IPR000408 -
Vifa5g02019 1079 ProSiteProfiles Ankyrin repeat profile. 61 93 IPR002110 GO:0005515
Vifa5g02019 1079 Coils Coil 708 728 - -
Vifa5g02019 1079 SUPERFAMILY Ankyrin repeat 44 135 IPR036770 -
Vifa5g02019 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 205 263 IPR000408 -
Vifa5g02019 1079 PANTHER BTK-BINDING PROTEIN-RELATED 15 1070 - -
Vifa5g02019 1079 MobiDBLite consensus disorder prediction 1007 1040 - -
Vifa5g02019 1079 MobiDBLite consensus disorder prediction 759 777 - -
Vifa5g02019 1079 MobiDBLite consensus disorder prediction 8 22 - -
Vifa5g02019 1079 SUPERFAMILY RCC1/BLIP-II 118 430 IPR009091 -
Vifa5g02019 1079 Pfam Ankyrin repeats (3 copies) 48 126 IPR002110 GO:0005515
Vifa5g02019 1079 SUPERFAMILY RCC1/BLIP-II 408 506 IPR009091 -
Vifa5g02019 1079 SMART ANK_2a 95 124 IPR002110 GO:0005515
Vifa5g02019 1079 SMART ANK_2a 61 90 IPR002110 GO:0005515
Vifa5g02019 1079 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Vifa5g02019 1079 PRINTS Ankyrin repeat signature 62 77 IPR002110 GO:0005515
Vifa5g02019 1079 MobiDBLite consensus disorder prediction 1 22 - -
Vifa5g02019 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 153 204 IPR000408 -
Vifa5g02019 1079 MobiDBLite consensus disorder prediction 813 859 - -
Vifa5g02019 1079 MobiDBLite consensus disorder prediction 759 875 - -
Vifa5g02019 1079 Gene3D - 22 128 IPR036770 -
Vifa5g02019 1079 ProSiteProfiles Ankyrin repeat region circular profile. 61 92 - -
Vifa5g02019 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 314 IPR000408 -
Vifa5g02019 1079 ProSiteProfiles Ankyrin repeat profile. 95 127 IPR002110 GO:0005515
Vifa5g02019 1079 ProSiteProfiles Ankyrin repeat region circular profile. 95 126 - -
Vifa5g02019 1079 PRINTS Chromosome condensation regulator RCC1 signature 188 201 IPR000408 -
Vifa5g02019 1079 PRINTS Chromosome condensation regulator RCC1 signature 264 280 IPR000408 -
Vifa5g02019 1079 PRINTS Chromosome condensation regulator RCC1 signature 154 170 IPR000408 -
Vifa5g02019 1079 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Vifa5g02019 1079 PRINTS Chromosome condensation regulator RCC1 signature 414 432 IPR000408 -
Vifa5g02019 1079 PRINTS Chromosome condensation regulator RCC1 signature 207 223 IPR000408 -
Vifa5g02019 1079 PRINTS Chromosome condensation regulator RCC1 signature 317 331 IPR000408 -
Vifa5g02019 1079 Gene3D - 129 383 IPR009091 -
Vifa5g02019 1079 Gene3D - 384 514 IPR009091 -
Vifa5g02019 1079 MobiDBLite consensus disorder prediction 888 912 - -
Vifa5g02019 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 205 259 IPR000408 -
Vifa5g02019 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 264 311 IPR000408 -
Vifa5g02019 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 154 201 IPR000408 -
Vifa5g02019 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 315 365 IPR000408 -
Vifa5g02019 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 368 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02019 Vifa-Chr5 672095144 672101353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02019 34 135 Acyl Lipid Metabolism Gene Families AT5G53470 33.333 2.86e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02019 K24810 - gmx:100800604 1686.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02019 5 672095144 672101353 Vifa5g02019 5 672095144 672101353 ECH