Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02015 ATGGCTAAAATTCCCTTCTTTTTGGTAGGGTTTTGGCTGTTAAGTAATTGTGCTGGTTTATTGGAGGCTGAAGACATGATGAAATACAAGAACCCTAAGGAATCAAATGATGTCAGGGTTGAGGATCTTCTCAACAGGATGACTCTCGAGGAGAAAATCGGTCAAATGTTACAGATCGAGCGCAAGTGTGCATCTGATAATGTGCTCAACAAGTATTTCATAGGGAGTGTTATGAGTGAGGGAGGGAGTATTCCAGTTCCAAAGGCTTCTGCTGAAAATTGGATTGATATGTTGAATGAATTTCAGAAGGATGCTTTATCAACAAGGCTTGGAATTCCAGTTTTTTATGGGATTGATGCTGTTCATGGCCACAACACTGTTTACAAAGCAACTATTTTTCCTCACAATATTGGCCTTGGAGCTACCAGGGATCCTGAACTAGTCAAGAGAATCGGAGCTGCAACCGCACTTGAAGTTCGAGCAACGGGAATTCAGTATGCTTATGCACCTTGTGTAGCAGTTTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTATAGCGAAGATCCGAAACTAGTTGAAGCTATGACTGATATCATATTAGGATTGCAAGGGGACATCCCTGATAATATGCCAAATGGTCTTCCTTTTATTGCTGGAAAAGAAAAGGTTCTAGCTTGTGCTAAGCACTACGTTGGTGACGGTGGAACGATCGATGGGATTAATGAGAGTAATACTGTGATAGATATAAATGAATTGATGGAAATTCACATGCCGGGTTACTTAAGCTCCATTAGCAAGGGTGTGGCAACTGTTATGGTATCTTACTCAAGTTGGAATGGGGTGAAAATGCATACTCATCATGATCTTATTACTGGTTTCCTCAAAAATACTCTCCATTTCCAGGGCTTTGTCATTTCAGATTTTGAGGGTATTGATAGGATCACCACTCCCCATCGTGCAAACTGTACAGATTCGCTTCAAGCAGCAGTTTCTTCCGGCATTGACATGTTCATGGTTCCAAAGTTCTACAAGAATTTCATTGAAGATCTAACAATATTGGTGAAAAATGAAGCCATTCCTATGAGTCGAATTGATGATGCTGTGAGAAGAATTTTGCGTGTTAAATTCATGATGGGAATTTTTGAGAACCCTTTTGCTGATTATAGTTTGGTTAATTATCTTGGGACTAAGGAACATAGAGAACTTGCTAGAGAAGCTGTAAGGAAATCCATGGTCCTTCTAAAAAATGGCAAATCTGATAAAAAGCCTTTGTTACCTCTTCCTAAAAAGGTTCCGAAAATACTCGTGGCCGGAAGCCATGCAAATAATCTAGGATATCAGTGTGGTGGCTGGACCATTGAATGGCAAGGAGTCAGTGGCAACAATCTTCTCGAAGGGACTACAATTCTTGATGCTATAAAGAACACGGTCGATTCAGAGACCATTGTGATCTACGAGGAGAACCCTGATATAGAATTTGTTAAATCCAATGGATTTTCCTACGCTATAGTCGTAGTAGGGGAGAAACCTTATGCTGAAACGCATGGTGACAACATGAACTTAACAATTCCAAGCCCTGGTCCCGAGACCATAACAAATGTCTGTGGAGCTATAGAATGTGCGGTTGTGATTATCTCCGGCCGGCCTTTGGTTATCCAACCGTATGTTGGTTTGATGGATGCTGTTGTTGCTGGTTGGCTACCAGGCAGTGAAGGACAAGGTGTGGCTGATGTTTTATTTGGTGACTATGGTTTCACAGGAAAGCTTCCAAGAACATGGTTCAAAAGTGTTGTTCAACTTCCAATGAATGTTGGAGATGCTCATTATGATCCTCTTTTTCCTTTTGGGTTTGGCCTTACTACTGAACCTACTGAGGCTATTTACTCTCAGTAG 1899 0.4123 MAKIPFFLVGFWLLSNCAGLLEAEDMMKYKNPKESNDVRVEDLLNRMTLEEKIGQMLQIERKCASDNVLNKYFIGSVMSEGGSIPVPKASAENWIDMLNEFQKDALSTRLGIPVFYGIDAVHGHNTVYKATIFPHNIGLGATRDPELVKRIGAATALEVRATGIQYAYAPCVAVCRDPRWGRCYESYSEDPKLVEAMTDIILGLQGDIPDNMPNGLPFIAGKEKVLACAKHYVGDGGTIDGINESNTVIDINELMEIHMPGYLSSISKGVATVMVSYSSWNGVKMHTHHDLITGFLKNTLHFQGFVISDFEGIDRITTPHRANCTDSLQAAVSSGIDMFMVPKFYKNFIEDLTILVKNEAIPMSRIDDAVRRILRVKFMMGIFENPFADYSLVNYLGTKEHRELAREAVRKSMVLLKNGKSDKKPLLPLPKKVPKILVAGSHANNLGYQCGGWTIEWQGVSGNNLLEGTTILDAIKNTVDSETIVIYEENPDIEFVKSNGFSYAIVVVGEKPYAETHGDNMNLTIPSPGPETITNVCGAIECAVVIISGRPLVIQPYVGLMDAVVAGWLPGSEGQGVADVLFGDYGFTGKLPRTWFKSVVQLPMNVGDAHYDPLFPFGFGLTTEPTEAIYSQ 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02015 632 FunFam Glycosyl hydrolase family protein 398 624 - -
Vifa5g02015 632 Pfam Glycosyl hydrolase family 3 C-terminal domain 413 622 IPR002772 GO:0004553|GO:0005975
Vifa5g02015 632 SUPERFAMILY (Trans)glycosidases 26 412 IPR017853 -
Vifa5g02015 632 PRINTS Glycosyl hydrolase family 3 signature 109 125 IPR001764 GO:0004553|GO:0005975
Vifa5g02015 632 PRINTS Glycosyl hydrolase family 3 signature 179 195 IPR001764 GO:0004553|GO:0005975
Vifa5g02015 632 PRINTS Glycosyl hydrolase family 3 signature 295 313 IPR001764 GO:0004553|GO:0005975
Vifa5g02015 632 PRINTS Glycosyl hydrolase family 3 signature 225 241 IPR001764 GO:0004553|GO:0005975
Vifa5g02015 632 PRINTS Glycosyl hydrolase family 3 signature 133 152 IPR001764 GO:0004553|GO:0005975
Vifa5g02015 632 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 26 627 - -
Vifa5g02015 632 Gene3D - 22 397 IPR036962 GO:0004553|GO:0005975
Vifa5g02015 632 Pfam Glycosyl hydrolase family 3 N terminal domain 48 376 IPR001764 GO:0004553|GO:0005975
Vifa5g02015 632 Gene3D - 398 624 IPR036881 GO:0004553|GO:0005975
Vifa5g02015 632 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 413 622 IPR036881 GO:0004553|GO:0005975
Vifa5g02015 632 FunFam Beta-D-glucan exohydrolase isoenzyme ExoI 22 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02015 Vifa-Chr5 671773681 671776384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02015 13 625 Glycoside Hydrolase AT5G20950 67.863 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02015 K05349 - gmx:100779642 1042.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02015 5 671773681 671776384 Vifa5g02015 5 671773681 671776384 ECH