Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02008 ATGTCCACCGATCCAAACCACCCCGAAATGGCTCTAATTCTCGGCCCCGATTCCTCCCACTTAGAATCCCTAATCACAAACCTCATGTCCTCCTCCAACGACCTTCGCTCCCAAGCCGAAAATATCTTCAACCTATGCAAACAAACCTACCCCGATTCCCTAATCCTCAAACTCGCCCAACTTCTCCACACTTCCCCGAACCCTGAAACCCGCACCATGTCCACAATCCTCCTCCGCCGCCACCTCACGCGCCACCACGACGACTCCTTCATCTACCCACACCTAACCGCCTCCACTCAATCCACTCTCCGTTCCCTCCTCCTCTCCTCTCTCCATCAAGAGCCTGTCAAATCCATTGCTAAGAAGCTATGCGACACGGTTTCTGAACTTGCTTCTGCACTTCTCTCCGAAGACCTTGCTTCGTGGCCTGACCTACTCCCGCTTCTCTTCCAGTGGGTTACTTCACCTGACGCTAGGCTTCAGGAGATTTCGCTACTTGTGTTTGCTCAATTGGCTCATTACATAGATGTCCGCATCGCTGCTCTTGCTGCCAGCATCAATTTTGTTCAGTGTCTCTCCAATCCCTCTGACCGTGACAGGTTCCAAGATTTGCTTCCTCTGATGATGCAGACATTGACAGAGGCATTGAATTCTGGTCAGGAGGCGATTGCACAAGACGCACTTGAACTCCTCATTGAGCTTGCAGGGACTGAGCCACGTTTCTTGCGAAGGCAGATTGTTGATGTTGTTGGTGCCATGCTGCAAATCAGTGAGGCCGAGTCATTGGAAGAAGGGACTCGCCATTTGGCTATTGAGTTTGTTGTTACCCTTGCTGAGGCGAGGGAGCGTGCTCCTGGGATGATGAGGAAGTTGCCACAGTTTGTGAAAAAGCTATTTGGTGTGCTGATGAATTTGTTGCTGGATATTGAGGATGATGCTGCTTGGCATGCCGCGGTGTCTGAAGATGAGGATGCTGGTGAGACTAGTAACTACGGATTTGGACAGGAATGTTTGGATAGACTTTCAATTTCTTTGGGCGGGAACACGATAGTTCCAGTTGCGTCTGAGTTGCTGCCAACTTACTTGTCTGCACCTGAATGGCAAAAGCGCCATGCTGCACTCGTTGCCTTTGCACAAATTGCAGAGGGTTGTTCCAAGGTGATGACTAAGAATCTGGAGCATGTATTGTCAATGGTGTTAAATTCATTTCCTGATCCAAACCCTCGGGTACGGTGGGCGGCTATAAACGCAATTGGACAGTTGTCCACAGATTTGGGACCAAACTTGCAGATTAACTATCATCACTTAGTGCTTCCTGCATTAGCGGGAGCCATGGATGATTTTCAAAATCCTCGAGTACAGGCTCATGCAGCTTCTGCAGTGCTAAATTTTACCGAGAATTGCAACCCAGATATTCTAATACCTTATTTGGATGGGATTGTGAGCAAACTTCTTGTACTCCTTCAGGGTGGAAACCAGATGGTTCAAGAAGGTGCTCTGACAGCATTAGCATCTGTTGCTGATTCTTCACAGGAGAAATTTCAGAAGTATTATGATGCTGTAACCCCATATCTAAAAGCTATTTTATTGAATGCAAATGATAAATCTAATCGTATGCTTCGTGCCAAAGCAATGGAGTGTATTAGTTTGGTAGGAATGGCTGTTGGAAAGGAGAAGTTCAGGGATGATGCCAAGCAGGTCATGGATGTCTTGATGTCACTGCAACAATCTCAACTGGATGCTGATGATCCAACTGCAAGTTACATGTTACAAGCATGGGCACGACTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATACATGGGATTTGTCATGCCTCCCTTGCTTCAATCTGCACAACTTAAGCCTGATGTGACAATTACATCAACAGATTCTGACGCCGAGTTTGATGAAGAGGATGACAGCATTGAAACCATCACTCTCGGGGACAAAAGGATAGGCATTAAGACCAGTGTCCTGGAGGAGAAGGCTACAGCATGTAACATGTTATGTTGCTATGCCGATGAGTTGAAGGAAGGTTTTTTTCCTTGGATTGACCAGGTTGCTTTCACATTGGTTCCTCTTCTTAAATTTTACTTCCATGAAGAAGTTAGGAAAGCAGCTGTTTCAGCTATGCCGGAACTGCTGACTTCTGCAAAATTGGCTATAGAGAAGGGGCAGTCACAAGGCCGTGATGCAACTTACTTAAAACAATTGTCTGATTATATAATTCCAAATTTGGTGGAAGCTTTACACAAGGAGCCAGAGGTAGAAATTTGTGCAAGCATGTTGGATGCACTGAATGAATGCATACAGGTTTCAGGAGCACATCTAGATGAAAAGCAAGTAAGGAGCATTGTTGATGAGATTAAACAAGTCATCACCGCCAGTTCATCCAGAAAGCATGAAAGAGCAGAGAGAGCCAAAGAAGAGGACTTTGATGCCGAAGAAAGAGAACTACTCAAGGAGGAAAATGAGCAAGAAGAAGAACTTTTTGATCAAATTGGTGATTGCTTGGGGACGTTGATAAAAACATTCAGAGCATCTTTTTTGCCTTTCTTTGAAGAGCTTTCGTCATACCTAACACCTATGTTTGGTAAAGACAAAACCTCAGAGGAAAGGAGAATTGCTATTTGTATATTTGATGACATTGCTGAGCACTGCCGCGAAGCAGCTCTTAAATATTATGATTCATTTCTTCCATTCTTGCTTGAAGCTTGCAACGATGAATGTTCAGATGTTCGACAGGCAGCTGTTTATGGGGTTGGTGTATGTGCTGAGTTTGGTGGATCTGTTTTCAAACCTCTTGTTGGAGAGGCACTTTCAAGGTTAAATGCTGTAATAACACATCCAAATGCACGAGATTCTGATAATGTTATGGCATATGATAATGCTGTTTCAGCTCTTGGAAAAATATGCCAGTTCCACCGTGATAGCATAAATGCAGCACAGGTTGTTCCGGCCTGGCTAAGTTGCTTGCCTATAAAAGGTGATTTAATTGAGGCTAAAGTTGTGCATGACCTACTTTGCTCAATGGTCGAAAGATCTGATAGAGAACTTATCGGTCAAAACAATCAATATCTTCCCAAGATTGTTACAATTTTTGCCGAGATATTATGTGCGGGAACTGATCTGGCAACAGAACAAACTGTAAGTCGGATGATTAATTTATTGAGGCAACTTCAACAGACTTTGCCACCTTCTACCCTTGCTTCAACCTGGTCATCATTGCACCCTCAGCAACAGCTTGCACTTCAGTCCATTCTATCATCCTAG 3276 0.4487 MSTDPNHPEMALILGPDSSHLESLITNLMSSSNDLRSQAENIFNLCKQTYPDSLILKLAQLLHTSPNPETRTMSTILLRRHLTRHHDDSFIYPHLTASTQSTLRSLLLSSLHQEPVKSIAKKLCDTVSELASALLSEDLASWPDLLPLLFQWVTSPDARLQEISLLVFAQLAHYIDVRIAALAASINFVQCLSNPSDRDRFQDLLPLMMQTLTEALNSGQEAIAQDALELLIELAGTEPRFLRRQIVDVVGAMLQISEAESLEEGTRHLAIEFVVTLAEARERAPGMMRKLPQFVKKLFGVLMNLLLDIEDDAAWHAAVSEDEDAGETSNYGFGQECLDRLSISLGGNTIVPVASELLPTYLSAPEWQKRHAALVAFAQIAEGCSKVMTKNLEHVLSMVLNSFPDPNPRVRWAAINAIGQLSTDLGPNLQINYHHLVLPALAGAMDDFQNPRVQAHAASAVLNFTENCNPDILIPYLDGIVSKLLVLLQGGNQMVQEGALTALASVADSSQEKFQKYYDAVTPYLKAILLNANDKSNRMLRAKAMECISLVGMAVGKEKFRDDAKQVMDVLMSLQQSQLDADDPTASYMLQAWARLCKCLGQDFLPYMGFVMPPLLQSAQLKPDVTITSTDSDAEFDEEDDSIETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAFTLVPLLKFYFHEEVRKAAVSAMPELLTSAKLAIEKGQSQGRDATYLKQLSDYIIPNLVEALHKEPEVEICASMLDALNECIQVSGAHLDEKQVRSIVDEIKQVITASSSRKHERAERAKEEDFDAEERELLKEENEQEEELFDQIGDCLGTLIKTFRASFLPFFEELSSYLTPMFGKDKTSEERRIAICIFDDIAEHCREAALKYYDSFLPFLLEACNDECSDVRQAAVYGVGVCAEFGGSVFKPLVGEALSRLNAVITHPNARDSDNVMAYDNAVSALGKICQFHRDSINAAQVVPAWLSCLPIKGDLIEAKVVHDLLCSMVERSDRELIGQNNQYLPKIVTIFAEILCAGTDLATEQTVSRMINLLRQLQQTLPPSTLASTWSSLHPQQQLALQSILSS 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02008 1091 Gene3D - 17 1090 IPR011989 -
Vifa5g02008 1091 Pfam Importin repeat 261 352 IPR041653 -
Vifa5g02008 1091 ProSiteProfiles HEAT repeat profile. 395 433 IPR021133 -
Vifa5g02008 1091 Pfam HEAT repeat 899 927 IPR000357 GO:0005515
Vifa5g02008 1091 Pfam HEAT repeats 361 460 - -
Vifa5g02008 1091 SUPERFAMILY ARM repeat 20 930 IPR016024 -
Vifa5g02008 1091 Coils Coil 806 830 - -
Vifa5g02008 1091 Pfam Importin repeat 6 760 863 IPR041389 -
Vifa5g02008 1091 PANTHER IMPORTIN BETA 24 1063 IPR040122 GO:0006606
Vifa5g02008 1091 SMART TOG_3 344 585 IPR034085 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02008 Vifa-Chr5 669499208 669508036 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02008 K20222 - gmx:100797431 1840.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02008 5 669499208 669508036 Vifa5g02008 5 669499208 669508036 ECH