Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01995 ATGGCAGCTGTTGCTCCGTCCTCTGACAAAGCTGCAAGCTTATTGCAGAATTTGTCCCTGGATTCACAGCCAAAGACTATTATTAATGGAGATGCTGAGTCCGTGAAGAAGAATGGACCTAGTTTTGCCGTTAGTAACACTAAGGGGGCAGGCAAGCCATTCAATCCGAATCCAAGTTTTGCTCCAAATGGATACCCTTCTACTGCATATTATTATGGAGGTTATGATGGACAAGGAGATTGGAGTGGCTATTCCAATTATGCGAACCTTGATGGAGGGATGGCTCAAGGTGTTTATGGTGATAACTGCTCTTATTTGTATCAAGGTTATGGATATGCACCATATGGAGCATATGCTTCACCCAATTCCTCCTCTCCAATGGTTCAACATGATGGTCAGCTGTATGGGCTCCAACAGTATCATTTGCCAGCTTGTGCTCCATTGTCAGGATATCAGGGTCAAAGATTGGGTACTCATGGTACACAGTCGGCAATCCCTACAGATCTGTCATTGGTTTCTGATCGACAGACCAAACATGGAGGAAAGGTTGGATTATCTTCACAAGTTATGCCTGTCAAAGATTTCTCATCTCAAAGAAATCAAAGACACACTCCGCCACTTCCACAATTCATGAACTTGAATGGTTCCAGGTATCCATCTGGAATGGAACTAGTTCCTGGATTCATGAACAGCATGTATCCAAGCAACAGTATGTTCAGCCAATATGGAAACACTTTCAGAGCTAATTCTAGCTTTGGCTCTTCTGCATATGGATCTAGAACTGGCTCTTATGATTACAAGTTTAGAGCCACATGTAATGGCTATGTTGCTAATGATTCCAGAAGGAATGTGGACGGTTTCAGTGAGCTAAATAAGGGACCAAGAGCTGCGAAGATTTCTGATAATAAAGGCGTAAAAAGTCTTGCTCCTGTCACATTATTACTTAAAGGACAGAACCTTCCAGTGAAGAGTGATAACAAAGAAGTGCCTCAGGTGGTTCCGAATAAAGAACAATACAATGGAGAAGATTTGTCTGAGAATTATTCTGATGCAAAATTTTATGTCATCAAATCCTACAGCGAGGATGATGTTCATAAGAGCATAAAATATAATGTTTGGGCAAGCACTCCCAACGGCAACAAAAAGCTGGATGCAACATATCAAGAAGCCAAGGAGAAGCCCGGTGGCTGTCCCATATTTTTGTTATTTTCGGTCAATACTAGCGGTCAATTTGTTGGTTTAGCTGAGATGACTGGTCCAGTTGATTTCGATAAATCTGTAGAGTATTGGCAGCAGGATAGGTGGACTGGTTGCTTTAATGTGAAGTGGCATATCATTAAGGATATCCCAAATGGTGTGTTAAGGCACATAACACTTGAAAACAATGAAGGCAAACCTGTAACTAATAGCAGGGATACTCAAGAGGTTAAGTTTGATAAGGGCATTCAAATTGTAAAAATTTTCAAGGAACATTCAAGCAAAACAAGCATATTGGATGATTTTGGGTTTTATGAGTCTCGTGAAAAGACCACTCAGGAGAGGAAGTATAAGGAACAGCAGTTACCAAAACCTGTCAACAATGCCGATGCAGCACAAGGAAAGGTGAATTCTGAGGTACTGATAGAAAGGAATCGGTCCTCCCCAGCATTTGAAGATTCTTCTAAGAGCAGTTAA 1674 0.4134 MAAVAPSSDKAASLLQNLSLDSQPKTIINGDAESVKKNGPSFAVSNTKGAGKPFNPNPSFAPNGYPSTAYYYGGYDGQGDWSGYSNYANLDGGMAQGVYGDNCSYLYQGYGYAPYGAYASPNSSSPMVQHDGQLYGLQQYHLPACAPLSGYQGQRLGTHGTQSAIPTDLSLVSDRQTKHGGKVGLSSQVMPVKDFSSQRNQRHTPPLPQFMNLNGSRYPSGMELVPGFMNSMYPSNSMFSQYGNTFRANSSFGSSAYGSRTGSYDYKFRATCNGYVANDSRRNVDGFSELNKGPRAAKISDNKGVKSLAPVTLLLKGQNLPVKSDNKEVPQVVPNKEQYNGEDLSENYSDAKFYVIKSYSEDDVHKSIKYNVWASTPNGNKKLDATYQEAKEKPGGCPIFLLFSVNTSGQFVGLAEMTGPVDFDKSVEYWQQDRWTGCFNVKWHIIKDIPNGVLRHITLENNEGKPVTNSRDTQEVKFDKGIQIVKIFKEHSSKTSILDDFGFYESREKTTQERKYKEQQLPKPVNNADAAQGKVNSEVLIERNRSSPAFEDSSKSS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01995 557 Gene3D ph1033 like domains 331 502 - -
Vifa5g01995 557 ProSiteProfiles YTH domain profile. 351 488 IPR007275 GO:0003723
Vifa5g01995 557 FunFam YTH domain family 1, isoform CRA_a 330 503 - -
Vifa5g01995 557 CDD YTH 352 488 IPR007275 GO:0003723
Vifa5g01995 557 MobiDBLite consensus disorder prediction 39 53 - -
Vifa5g01995 557 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 81 528 IPR045168 -
Vifa5g01995 557 MobiDBLite consensus disorder prediction 511 557 - -
Vifa5g01995 557 MobiDBLite consensus disorder prediction 29 58 - -
Vifa5g01995 557 Pfam YT521-B-like domain 351 489 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01995 Vifa-Chr5 666246633 666250066 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01995 - K20102 gmx:100818027 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01995 5 666246633 666250066 Vifa5g01995 5 666246633 666250066 ECH