Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01988 ATGGAAAAAGATTCGATTTTGATAATGTTGTTAATGGTGGGGTTGTTGGGTTTGTATGTGGAAGGGCTTGGTGTGAACTGGGGAACACAAGCAACTCACAAGTTGCCTCCGGAAACGGTTGTTCAGATGTTGAAGGATAATGGGATTCAGAAAGTTAAGCTTTTTGATGCGGATGATACTACAATGAGTGCTTTGGCTGGGAGTGGGATTGAAGTGATGGTTGCGATTCCTAATAATCAGCTTGCTGAGATGAATGAGTATAAACGGGCTCAACAATGGGTTAGGAAGAATGTTACTCGGTATAACTTCGATGGTGGTGTTAAGATCAAATATGTAGCAGTTGGGAATGAGCCATTTTTGAAATCCTACAACAATTCATTCTTGAACATCACACTACCTGCACTGCAGAACATTCAAAATGCCATTAATGAAGCCGGTCTTGGAAACGCTGTAAAGGCTACTGTGCCTTTAAATGCCGATGTTTATGAGTCTCCGGTGGACAATCCTCTTCCATCTGCAGGAGTATTTAGGCCTGATATCAATGGTCTCATGACTCAGATGGTAGAATTTCTCAACAAGAATGCTGCACCATTTACCGTCAACATTTACCCCTTCTTAAGTCTTTACGGAAATGACGATTTCCCTTTCAACTACGCCTTTTTTGACGGTGTAGACAAACCGATAAACGATAACGGAATCTTATACACCAATGTCTTCGACGCAAATTTCGATACATTGGTTTCTGCTCTCAAATCAGTCGGTTTTGGCGACACACCAATTTTGGTAGGAGAAGTAGGATGGCCTACAGAAGGCGACAAGAGTGCCACCACCGGAAATGCAATAAGATTCTACAATGGCCTCCTTTCAAGGGTCGCAGCAAACAAAGGAACCCCTCGCCGTCCCGGATTCATCGAAGTTTATCTCTTCGGACTCATCGACGAAGACGCAAAGAGCATTGCCCCAGGGAACTTTGAGAGACACTGGGGAATATTCCGATACGATGGACAGCCAAAGTTTACAATGGATCTTTCAGGCCAAGGTCAAAACAAGCTTCTAGTCGGTGCACAAAACGTGAAGTATCTCGATCAATCATGGTGCGTGTTTAATCCCAATGCTAAAGATCTCAGCAAACTTAATGACAATATCAATTACGCTTGCACTTACGGAGATTGCACCGCACTCGGATATGGATCTTCTTGCAACAACCTTGATGCTAATGGAAATGCTTCTTATGCATTCAACATGTACTATCAAGTGCAGAATCAGGATCGTCAAGCTTGCAATTTTCAAGGCTTAGCTAAGATTACTACAGAGAATATTTCAACACCTACTTGCAATTTCCTCATTCAGATTGTTCCTTCTTCAGCATCTTCTTCTATGCCTTCATTTCCTGTTTTGTTGTTTATCGCTTTCTCTATGATTCTCTTGGCTTAG 1434 0.4233 MEKDSILIMLLMVGLLGLYVEGLGVNWGTQATHKLPPETVVQMLKDNGIQKVKLFDADDTTMSALAGSGIEVMVAIPNNQLAEMNEYKRAQQWVRKNVTRYNFDGGVKIKYVAVGNEPFLKSYNNSFLNITLPALQNIQNAINEAGLGNAVKATVPLNADVYESPVDNPLPSAGVFRPDINGLMTQMVEFLNKNAAPFTVNIYPFLSLYGNDDFPFNYAFFDGVDKPINDNGILYTNVFDANFDTLVSALKSVGFGDTPILVGEVGWPTEGDKSATTGNAIRFYNGLLSRVAANKGTPRRPGFIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFTMDLSGQGQNKLLVGAQNVKYLDQSWCVFNPNAKDLSKLNDNINYACTYGDCTALGYGSSCNNLDANGNASYAFNMYYQVQNQDRQACNFQGLAKITTENISTPTCNFLIQIVPSSASSSMPSFPVLLFIAFSMILLA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01988 477 SMART X8_cls 364 447 IPR012946 -
Vifa5g01988 477 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 12 436 IPR044965 GO:0004553|GO:0005975
Vifa5g01988 477 FunFam Glucan endo-1,3-beta-glucosidase 5 22 349 - -
Vifa5g01988 477 Pfam X8 domain 365 433 IPR012946 -
Vifa5g01988 477 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Vifa5g01988 477 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Vifa5g01988 477 FunFam Glucan endo-1,3-beta-glucosidase 8 360 456 - -
Vifa5g01988 477 Gene3D Glycosidases 22 350 - -
Vifa5g01988 477 Gene3D - 359 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01988 Vifa-Chr5 663365042 663367712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01988 9 452 Miscellaneous Gene Families AT1G64760 76.802 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01988 - - gmx:100815300 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01988 5 663365042 663367712 Vifa5g01988 5 663365042 663367712 ECH