Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01962 ATGTTGTCACAAATTGCATTCAACCCAATTCTGTGTGTAACTCCATCGGCATTGAACAAGAAGAAGAAAACTCCGTTTTGTTCTTCTTCTGATTCTCTTCTCTGTAGAACCAATTCGATGGCTTTCAATCATAGAACTAACAATTACTTACGCCATTTGGAATCAATGAAAATTCTTCCATCTGGTGCTGGTACAATTCCTCATTTGAATGCTGTTATTCTCGGTGAAAATCTTGCTACCGAAGAAGAAGAATTTGTTCTTCCTAGCGAAGAATTCGCTTCCCAAGCACATGTTCACTCACCCGAACAGTATTTGGACATGTATAAGAGATCCATTGAGGATCCTGCTGGATTTTGGTCTCAAATTGCATCCGATTTCTACTGGAAACAAAAATGGAGTGATCAAGTTTATAGTGAAAATTTTGATGTTACAAAAGGAAATATTAACATTCAGTGGTTCAAAGGTGGAATCACCAACATCTGTTATAATTGTGTGGATAGACATGTTGAAGCTGGACTTGCTGACAAAGTTGCCTTTTATTGGGAAGGGAATGAACTTGGTGTTGATGCTACTTTAACTTACGCTCAGCTTCTCGATCAAGTTTGCCAGGTTGCAAACTATCTGAGAGATATTGGTGTCAAAAAGGGGGATGCTGTGATTATTTATTTGCCCATGCTTATGGAGCTTCCAATCACGATGCTTGCTTGTGCCCGCATTGGTGCTGTTCATTCGGTTGTATTTGCCGGTTTTTCTTCCGAATCTCTTTCGCAGAGAATCATTGATTGTAAGCCAAAAGTTGTAATTACTTCTAATGCTGTTAAGAGGGGCTCTAAGGTTATCTATCTTAAAGACATTGTTGATTCCGCCATCAATGATTCAGCTAAAAATGGGGTCTCTATAGATGTTTGCCTAACTTATGACAACACATTAGCCTTGACGAGGGAGGATACTAAATGGAAGGAAGGGAGAGATATATGGTGGCAGGATGTCATTCCCCAATATCCAACCACTTGTCCGGTGGAGTGGCTTGGTGCCGAGGATCCACTTTTTCTACTCTATACAAGTGGGAGTACCGGAAAACCTAAGGGTGTTGTTCATACAACTGGTGGTTATATGGTATACACTGCAACAACATTTAAGTATGCATTTGACTACAAACCATCAGACATCTACTGGTGCACAGCTGATTGTGGTTGGATTACTGGGCACAGCTATGTCACTTATGGACCCATTCTCAATGGTGCAACTGTTGTTCTGTATGAAGGGGCTCCCAATTATCCTGATGCTGGGCGTAGTTGGAACATTGTTGACAAATATAAAGTATCAATATTCTACACTGCCCCTACATTGGTGCGATCCCTCATGCAATATGGTGATGAGCATGTTACCCGCTACTCGAGGAAATCTTTACGAGTCCTGGGAAGTGTAGGCGAGCCCATAAATCCAAGTGCATGGAGATGGTTTTACAATGTAGTTGGAGATTCAAGATGCCCTATCTCTGACACTTGGTGGCAAACAGAAACTGGTGGCTTCATGATAACTCCACTACCTGGTGCTTGGCCCCAGAAGCCTGGTTCTGCTACTTGCCCTTTCTTTGGAGTCGAGCCCGTCATAGTGGATGAGAAAGGTGTTGCAATAGAAGGAGAGTGTAGTGGTTACTTGTGTGTTAAGAGATCATGGCCAGGGGCATTCAGAACTTTGTATGGTGATCATGAACGATATGAAACAACATATTTCAAGCCCTTTGCTGGCTACTATTTCAGTGGTGATGGCTGCAGCAGGGATAAAGATGGATACTATTGGCTTACTGGGAGAGTTGACGATGTCATTAATGTCAGTGGCCATCGTATTGGGACGGCTGAAGTAGAATCAGCTCTAGTTTCACATCCAAAATGTGCTGAAGCAGCCGTTGTAGGCGTGGAGCACGAGGTTAAAGGACAGAGTATATATGCTTTTGTTACTCTTGTGGACGGCGTTCCATACAGTGAAGAACTGCGTAAGGACCTTGTACTCACAGTTCGAAAGCAGATAGGAGCATTTGCAGCACCTGACAAAATCCATTGGGCACCCGGGCTCCCAAAAACAAGGAGCGGAAAGATAATGAGAAGAATTCTGAGAAAAATTGCGTCTAGGCAGCTAGATGAACTCGGAGATACAAGTACCCTTGCAGAGCCACAAGTGGTCAACCAACTTATTGAACTAGCTGACTCGTGA 2214 0.4286 MLSQIAFNPILCVTPSALNKKKKTPFCSSSDSLLCRTNSMAFNHRTNNYLRHLESMKILPSGAGTIPHLNAVILGENLATEEEEFVLPSEEFASQAHVHSPEQYLDMYKRSIEDPAGFWSQIASDFYWKQKWSDQVYSENFDVTKGNINIQWFKGGITNICYNCVDRHVEAGLADKVAFYWEGNELGVDATLTYAQLLDQVCQVANYLRDIGVKKGDAVIIYLPMLMELPITMLACARIGAVHSVVFAGFSSESLSQRIIDCKPKVVITSNAVKRGSKVIYLKDIVDSAINDSAKNGVSIDVCLTYDNTLALTREDTKWKEGRDIWWQDVIPQYPTTCPVEWLGAEDPLFLLYTSGSTGKPKGVVHTTGGYMVYTATTFKYAFDYKPSDIYWCTADCGWITGHSYVTYGPILNGATVVLYEGAPNYPDAGRSWNIVDKYKVSIFYTAPTLVRSLMQYGDEHVTRYSRKSLRVLGSVGEPINPSAWRWFYNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATCPFFGVEPVIVDEKGVAIEGECSGYLCVKRSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPKCAEAAVVGVEHEVKGQSIYAFVTLVDGVPYSEELRKDLVLTVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLAEPQVVNQLIELADS 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01962 737 Hamap Acetyl-coenzyme A synthetase [acs]. 81 735 IPR011904 GO:0003987|GO:0016208|GO:0019427
Vifa5g01962 737 Pfam AMP-binding enzyme 172 612 IPR000873 -
Vifa5g01962 737 Pfam Acetyl-coenzyme A synthetase N-terminus 104 164 IPR032387 -
Vifa5g01962 737 Gene3D - 608 737 IPR045851 -
Vifa5g01962 737 PANTHER ACETYL-COENZYME A SYNTHETASE 87 733 - -
Vifa5g01962 737 Gene3D - 83 607 IPR042099 -
Vifa5g01962 737 NCBIfam acetate--CoA ligase 99 733 IPR011904 GO:0003987|GO:0016208|GO:0019427
Vifa5g01962 737 Pfam AMP-binding enzyme C-terminal domain 621 699 IPR025110 -
Vifa5g01962 737 CDD ACS 102 724 - -
Vifa5g01962 737 ProSitePatterns Putative AMP-binding domain signature. 351 362 IPR020845 -
Vifa5g01962 737 FunFam Acetyl-coenzyme A synthetase 608 737 - -
Vifa5g01962 737 FunFam Acetyl-coenzyme A synthetase 84 607 - -
Vifa5g01962 737 SUPERFAMILY Acetyl-CoA synthetase-like 90 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01962 Vifa-Chr5 651376960 651383708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01962 46 736 Acyl Lipid Metabolism Gene Families AT5G36880 81.910 0.0 1217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01962 K01895 - gmx:100789257 1296.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01962 5 651376960 651383708 Vifa5g01962 5 651376960 651383708 ECH