LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g01961	ATGAAGCTATCATGTTACACTCCACATGTTATTAACATACCTCAAGAACCAACCTTTTCTTCAGATAAAGCTCGTTTTTTCCTTCAAAACTGCAACAATTTCAACCAATTGAAACAAATCCACGCTAGAATCATCCGTTTTCGTCTCACCCATGACCAATTACTCATCAGAAAGCTTTGTCAAATTTCATCTTCGTATGGTGAAACAAATTACGCTAGTCTGGTTTTTGATCAGCTTGATTCTCCTGATACTTTTACCTGGAATGTTATGATTAGAGCTTGTAATACTAGTGGGTCACCCGAAAAAGCGATTTTTTTGTTTAAGGAGATGATGTGTAAGGGTTTTGTAACTGATAAATTTACGTACCCTTTTGTGTTAAATGCTTGTATTGCTTCTGGGGTTGTTGATTTTGGTAGAGTAGTGCACGGGGTTTCGATAAAAATGGGGTTTTGGAGTGATGTTTATGTGCAGAATAATATGATGAATCTTTACTTTAAGTGTGGGAGGTATGTTGTTGATGATGGGTGGAAGGTGTTTGAGAAAATGCGCGTGCGGAATGTGGTTTCTTGGACGACTGTGATTGCTGGGCTTGTTGGTTGTGGGAAATTGGATACTGCGAGGGAGGTTTTTGAGAAGATGGGTTGTAAGAATGTGGTTTCGTGGACTGCAATGATTGATGGGTATGTGAAATATGGTAACCCAATTATGGCGTTTGATTTGTTTGAAAGGATGCTGCTTGATAATGTGAGGCCTAATGAGTTTACTTTGGTGAGCTTGATTAAAGCTTGTACTGATTTGGGGAGTCTCAAATTGGGTCGGCGGATGCATGATTTTGCTATGAAGAATGGTTTTGAGGTTGGACCTTTCTTGGGTACTGCTCTTATTGATATGTATAGCAAATGTGGTAGTTTAGATGATGCTGTTAGAGTGTTTGGTTTGATGCAAGTGAGAAACTTGGCTACTTGGAATACAATGATTACGAGCTTCGGTGTGCATGGATTTAGGGATGAAGTGCTAGATCTTTTTGAAGAAATGGAGAGGGTTAATGTAGTTCCTGATGCTATCACTTTTGTAGGTGTTTTGAGTGCTTGTGTTCAAATGAATGTTCTGGAAGAAGGGTATAAGTATTTCAGTCTCATGACAGAGCATTATGGTATAACACCTATCTTTGAACATTATACATGCATAGTTGAACTCTATGTTCGTGCCAATGAGTTGAATGAGATTTGCACATTAGGGAACACAGTGTCATTGTCAATGAAAGCAAGTCATAATGTTGCAGAGTTGCTTCAAGAGAACAAACTCACTAGTATTGATGACATAGAGAAACTCATACACAAGCATTACAGGGATTCGGATTTATCAGAATTAATTTTAGATCATTCTGCAACTCCCACCCAGCCATATTTCAACCGTCCATATTTGACTTCACTAGTTTGA	1440	0.3847	MKLSCYTPHVINIPQEPTFSSDKARFFLQNCNNFNQLKQIHARIIRFRLTHDQLLIRKLCQISSSYGETNYASLVFDQLDSPDTFTWNVMIRACNTSGSPEKAIFLFKEMMCKGFVTDKFTYPFVLNACIASGVVDFGRVVHGVSIKMGFWSDVYVQNNMMNLYFKCGRYVVDDGWKVFEKMRVRNVVSWTTVIAGLVGCGKLDTAREVFEKMGCKNVVSWTAMIDGYVKYGNPIMAFDLFERMLLDNVRPNEFTLVSLIKACTDLGSLKLGRRMHDFAMKNGFEVGPFLGTALIDMYSKCGSLDDAVRVFGLMQVRNLATWNTMITSFGVHGFRDEVLDLFEEMERVNVVPDAITFVGVLSACVQMNVLEEGYKYFSLMTEHYGITPIFEHYTCIVELYVRANELNEICTLGNTVSLSMKASHNVAELLQENKLTSIDDIEKLIHKHYRDSDLSELILDHSATPTQPYFNRPYLTSLV	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g01961	479	Pfam	PPR repeat family	82	129	IPR002885	-
	Vifa5g01961	479	Pfam	PPR repeat family	216	263	IPR002885	-
	Vifa5g01961	479	Pfam	PPR repeat family	318	365	IPR002885	-
	Vifa5g01961	479	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	25	413	IPR046960	GO:0003723\|GO:0009451
	Vifa5g01961	479	NCBIfam	pentatricopeptide repeat	188	217	IPR002885	-
	Vifa5g01961	479	NCBIfam	pentatricopeptide repeat	292	318	IPR002885	-
	Vifa5g01961	479	NCBIfam	pentatricopeptide repeat	85	118	IPR002885	-
	Vifa5g01961	479	NCBIfam	pentatricopeptide repeat	321	354	IPR002885	-
	Vifa5g01961	479	NCBIfam	pentatricopeptide repeat	219	253	IPR002885	-
	Vifa5g01961	479	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	83	117	IPR002885	-
	Vifa5g01961	479	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	217	251	IPR002885	-
	Vifa5g01961	479	Gene3D	Tetratricopeptide repeat domain	172	267	IPR011990	GO:0005515
	Vifa5g01961	479	Gene3D	Tetratricopeptide repeat domain	29	171	IPR011990	GO:0005515
	Vifa5g01961	479	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	153	189	IPR002885	-
	Vifa5g01961	479	FunFam	Pentatricopeptide repeat-containing protein At5g66520	24	183	-	-
	Vifa5g01961	479	Gene3D	Tetratricopeptide repeat domain	268	422	IPR011990	GO:0005515
	Vifa5g01961	479	FunFam	pentatricopeptide repeat-containing protein At2g33680	291	445	-	-
	Vifa5g01961	479	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	318	352	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g01961	Vifa-Chr5	651356647	651358086	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g01961	33	416	Glycoside Hydrolase	AT3G49170	30.256	5.72e-52	186

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g01961	-		-	gmx:100789790	662.144