Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01960 ATGGGCGCCACCACAGAGCCAACCCTAGACCCCTCCGACGAGCAACAAAAACGCTCCGAAATCTACACCTACGAAGCCCCATGGCACATCTACGCCATGAACTGGAGCGTCCGCCGCGACAAAAAATACCGTCTCGCCATCGCTTCTCTCCTGGAACAATACCCTAACCGCGTCGAAATCGTCCAACTCGACGACACCAACGGCGAAATCAAATCCGATCCAAATCTCTCCTTCGAACATCCATACCCTCCCACCAAAGCAATCTTCATCCCTGACAAAGACTGCCACCGCCCCGACCTCCTAGCCACCTCCAGCGACTTTCTCCGTATATGGCGAATCTCCGATTCCGATGAATCCCAGTCTCGCGTTGAACTCAAAAGCCTCCTTAACGGTAACAAAAACAGTGAGTATTGCGGTCCTATAACCTCGTTCGACTGGAACGAAGCGGAGCCCAGACGAATCGGGACGTCCAGTATCGACACCACGTGTACCATTTGGGATATCGAGAAGGAAACCGTTGATACACAGCTGATCGCGCATGATAAAGAGGTGTACGATATAGCTTGGGGTGGTGTTGGTGTTTTCGCTTCGGTTTCTGCTGATGGGTCTGTTAGGGTTTTTGATTTACGCGATAAGGAACATTCCACCATAATTTACGAGAGCTCTGAAGCGGATACGCCCTTGGTTAGGCTGGGTTGGAATAAGCAGGATCCTCGTTATATGGCTACGATTATTATGGATACTGCTAAGGTTGTTGTGCTTGATATTCGTTTTCCCACCCTGCCGGTGGTGGAGTTGCAGAGACATCAGGCTAGTGTGAATGCGATTGCTTGGGCGCCGCATAGTTCTTGCCATATTTGTACTGCTGGGGATGATTCTCAGGCGTTGATTTGGGATCTTTCTTCCATGGGGCAACCCGTTGAAGGTGGGCTCGATCCGATTTTGGCTTACACCGCTGGTGCGGAAATTGAACAGCTTCAGTGGTCTTCTTCGCAGCCTGATTGGGTTGCTATTGCTTTCTCCTCTAAGCTTCAGATTCTTAGGGTGTGA 1050 0.5067 MGATTEPTLDPSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDTNGEIKSDPNLSFEHPYPPTKAIFIPDKDCHRPDLLATSSDFLRIWRISDSDESQSRVELKSLLNGNKNSEYCGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEADTPLVRLGWNKQDPRYMATIIMDTAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSSKLQILRV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01960 349 SMART WD40_4 170 208 IPR001680 GO:0005515
Vifa5g01960 349 SMART WD40_4 71 112 IPR001680 GO:0005515
Vifa5g01960 349 SMART WD40_4 122 167 IPR001680 GO:0005515
Vifa5g01960 349 SMART WD40_4 259 299 IPR001680 GO:0005515
Vifa5g01960 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 302 IPR001680 GO:0005515
Vifa5g01960 349 PANTHER WD REPEAT CONTAINING PROTEIN 12 349 IPR045159 -
Vifa5g01960 349 SUPERFAMILY WD40 repeat-like 30 346 IPR036322 GO:0005515
Vifa5g01960 349 FunFam WD repeat-containing protein LWD1 17 348 - -
Vifa5g01960 349 Gene3D - 17 349 IPR015943 GO:0005515
Vifa5g01960 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 302 - -
Vifa5g01960 349 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Vifa5g01960 349 Pfam WD domain, G-beta repeat 266 299 IPR001680 GO:0005515
Vifa5g01960 349 Pfam WD domain, G-beta repeat 177 208 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01960 Vifa-Chr5 650633018 650634067 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01960 K11805 - gmx:100818850 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01960 5 650633018 650634067 Vifa5g01960 5 650633018 650634067 ECH