Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01958 ATGGCTTCGGCTACTTTTTCTGTAGCCAAACCAGCTATTAAGGCAAATGGGAAAGGCTTCTCTGAACTCTCTAGTCTACGCAACTGTGATTTTCATTCTGTTGTTGCCTTCCAAACCAATGCAGTTGGAAGTAGTGGAAGATACAAGAAAGGTCTTGTAGTGGAAGCAAAACAACTGAAGGTAGCCATAAACGGATTTGGAAGAATTGGAAGGAACTTCTTGAGATGTTGGCACGGCCGCAAGGACTCGCCTCTTGATGTCATTGCCATCAATGACACCGGAGGTGTAAAGCAAGCTTCTCACCTTCTCAAGTATGATTCGACACTTGGAATCTTTGATGCTGATGTTAAGCCTGTTGGTACTGATGGCATCTCAGTTGATGGAAAGGTTATCAAAGTTGTCTCAGACCGCAACCCTGCCAACCTTCCTTGGAAGGAGTTGGGGATAGACTTGGTGATTGAAGGAACTGGAGTGTTTGTGGACAGAGAAGGTGCGGGGAGGCACATTACAGCAGGGGCTAAGAAGGTTCTCATCACTGCCCCTGGAAAAGGAGACATCCCTACTTATGTGGTTGGTGTCAATGCTGATGCTTACACCCATGACGACGACATTATCAGCAATGCTTCTTGCACCACTAACTGCCTTGCTCCCTTTGTCAAGGTCCTTGATCAGAAATTCGGTATTATCAAGGGTACCATGACTACCACTCACTCCTACACCGGTGACCAACGTCTTCTTGACGCGAGTCACCGTGACCTAAGGCGTGCGAGAGCAGCAGCACTTAACATAGTGCCAACATCAACAGGAGCAGCTAAAGCAGTGGCCCTTGTCCTCCCAACACTCAAAGGCAAGCTCAACGGTATTGCACTTCGTGTGCCAACACCAAACGTTTCGGTGGTGGACCTCGTCGTTCAAGTTTCAAAGAAGACATTTGCTGAAGAAGTGAATGAGGCTTTTAGAGAGAGTGCAGCCAAGGAGCTGACTGGTATTCTCTCAGTTTGTGACGAGCCACTCGTGTCCGTAGATTTTAGGTGCACTGATGTGTCATCTACCGTGGATTCCTCACTGACAATGGTCATGGGTGATGACATGGTTAAGGTGATTGCTTGGTATGATAATGAGTGGGGTTACTCACAAAGGGTTGTTGATTTGGCTGACATTGTTGCCAATAACTGGAAGTGA 1182 0.4721 MASATFSVAKPAIKANGKGFSELSSLRNCDFHSVVAFQTNAVGSSGRYKKGLVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLITAPGKGDIPTYVVGVNADAYTHDDDIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01958 393 FunFam Glyceraldehyde-3-phosphate dehydrogenase 59 217 - -
Vifa5g01958 393 Gene3D - 60 385 - -
Vifa5g01958 393 PIRSF GAPDH 57 393 IPR020831 GO:0016620
Vifa5g01958 393 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 58 393 IPR020831 GO:0016620
Vifa5g01958 393 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 210 372 - -
Vifa5g01958 393 Gene3D Dihydrodipicolinate Reductase; domain 2 209 373 - -
Vifa5g01958 393 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 168 181 IPR020831 GO:0016620
Vifa5g01958 393 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 327 342 IPR020831 GO:0016620
Vifa5g01958 393 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 287 304 IPR020831 GO:0016620
Vifa5g01958 393 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 231 247 IPR020831 GO:0016620
Vifa5g01958 393 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 204 222 IPR020831 GO:0016620
Vifa5g01958 393 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 60 383 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Vifa5g01958 393 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 208 215 IPR020830 GO:0016620
Vifa5g01958 393 FunFam Glyceraldehyde-3-phosphate dehydrogenase 209 373 - -
Vifa5g01958 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 59 226 IPR036291 -
Vifa5g01958 393 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 215 371 IPR020829 GO:0016620
Vifa5g01958 393 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 60 161 IPR020828 GO:0051287
Vifa5g01958 393 SMART gp_dh_n_7 59 210 IPR020828 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01958 Vifa-Chr5 650608305 650610721 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01958 K05298 - rcu:8273055 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01958 5 650608305 650610721 Vifa5g01958 5 650608305 650610721 ECH