Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01918 ATGAAAGAGATGTCGTTATCCACCGCCTCCCCTCCACCGGAATTAGAAGACGGATGCTTACGCCACGACGGCGGATGTCACGACACAAACAACGACGGCGCTTCGTTCGAGTGCTTTTTACTTGACGACGAGGGCTTCCCGTCACAACTCCCAGGGGAAGACCCTTCACCAAACGAATCTGAGAAAAGCAGTTTCGCCTCCGATTTCTACCGCTCCGGATCTGATTTCTCGTCGCTGTTATCGCCAGACGCTAACCGACACAGGGACCTCACGCTCACGTTCACGCCCGATTCGTTATCTTCCGGGAAGAAACTGAAGCAGGCCAATCTATTCCAGATTTGGGGATTCAAGAGAAATGTTGGAGTTGGTGGTTCTGTTGAATTTGAATCCAAACAAGGTGGTTATTGTGATGATATAGGTGAGGGAAGTGTTTCATCTGAGAAGAAGAAGATTGTTACACCTGGAAGTTGGGGTTCGATTTTGGGTCACAAAGGGAAAGTGGTTGAGAAATCAAATTCTTCTAGTAAGAGAAAGAGTTTTCATGGAGATAATAGGGTCACGCGTTCGTGTCCTTTTTACAAGAAAATGCCAGGAACAAACTTCACAGTTGATGCTTTTCGTTATGGATGTGTGGAGGGGTGCTCTGCGTACTTTCTTAGTCATTTCCATGCTGATCACTATGGTGGTCTTAGCAAGAAATGGTCACATGGTCCTATTTATTGCTCTCCACTTACTGGACGGCTGGTTAAAATGTGTCTCTATGTAAATCCTTCGTACATATGCCCTTTGGAATTTGACACTGAATATGTGATTGATGGTATCAAAGTGACTCTGATAGATGCTAACCATTGCCCTGGTGCAGCTTTGATTCACTTTGAGCTCCCAAATGGACAATGTTATTTGCATACCGGGGACTTTAGAGCTTGTAAACTGATGCAAGACTACCATCTTTTTGTACATAAACGTGTGAATGTACTATATCTGGATACTACGTATTGCAACCCAAAGTACAAGTTTCCTTTCAAGGAAGATGTACTAAACTATGTTGTCAAAATTACAAAGAACCGCCTCAAAATGCATCCTAGAACTTTAGTGGTTGTTGGGGCATACAGTATTGGAAAAGAATGTGTATATCTTGCAATTTCTAAGGCACTTGGGGTAAAAATCTATGCAAATGCTTCAAGAAGAAGGATTTTGCTAGCTTATGATTGCCCTGACTATTCAGATAGGCTCTGTACAAATGGAAATAACACCCTCCTCCATGTTATGCCCATGTCATCTCTGAGAATTGAGACTTTGAAAGAATATTTGAAAACCTACAAGGAACAATTCACATCAGTATTAGCATTTCGTCCAACAGGTTGGACTTTTAGTGAGAAGATAGGAAATGATTTGGAACTAATTAAACCTGTTTCCAAAGGAAATATCACGATATATGGGGTTCCCTACAGTGAGCATTCCAGCTTCACAGAACTGCGGGATTTTGTTCAGTTTTTAAGGCCTGACAAGATAATTCCTACTGTGAATGTTGGCAATGCTGCTACTCGAGAAAATATGCAATCTTACTTTCGAGACTGGTTGAAGGGATGA 1590 0.4233 MKEMSLSTASPPPELEDGCLRHDGGCHDTNNDGASFECFLLDDEGFPSQLPGEDPSPNESEKSSFASDFYRSGSDFSSLLSPDANRHRDLTLTFTPDSLSSGKKLKQANLFQIWGFKRNVGVGGSVEFESKQGGYCDDIGEGSVSSEKKKIVTPGSWGSILGHKGKVVEKSNSSSKRKSFHGDNRVTRSCPFYKKMPGTNFTVDAFRYGCVEGCSAYFLSHFHADHYGGLSKKWSHGPIYCSPLTGRLVKMCLYVNPSYICPLEFDTEYVIDGIKVTLIDANHCPGAALIHFELPNGQCYLHTGDFRACKLMQDYHLFVHKRVNVLYLDTTYCNPKYKFPFKEDVLNYVVKITKNRLKMHPRTLVVVGAYSIGKECVYLAISKALGVKIYANASRRRILLAYDCPDYSDRLCTNGNNTLLHVMPMSSLRIETLKEYLKTYKEQFTSVLAFRPTGWTFSEKIGNDLELIKPVSKGNITIYGVPYSEHSSFTELRDFVQFLRPDKIIPTVNVGNAATRENMQSYFRDWLKG 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01918 529 CDD SNM1A-1C-like_MBL-fold 181 335 - -
Vifa5g01918 529 MobiDBLite consensus disorder prediction 1 26 - -
Vifa5g01918 529 Pfam DNA repair metallo-beta-lactamase 408 512 IPR011084 -
Vifa5g01918 529 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 186 520 - -
Vifa5g01918 529 Gene3D - 338 486 - -
Vifa5g01918 529 FunFam DNA cross-link repair 1A 196 360 - -
Vifa5g01918 529 FunFam DNA cross-link repair 1A 338 486 - -
Vifa5g01918 529 MobiDBLite consensus disorder prediction 43 65 - -
Vifa5g01918 529 Gene3D - 197 508 IPR036866 -
Vifa5g01918 529 SUPERFAMILY Metallo-hydrolase/oxidoreductase 212 511 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01918 Vifa-Chr5 556929883 556933375 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01918 K15340 - gmx:100790844 771.926