Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01914 ATGGCTTCTTTCCTCACAACCCCACACCCCATTCCCACACCCTTCATCACCAAACCCACCTCTTCCCCAAAACCACGAGACTTCTTCATCCTCAACCACCCTTTTCACCACCAAACCTTCAAAACCCTAGTTCCCTCAAAACCCCTTTCCCCTCCCAATGCAGTCTACACTCAGGGACTTTATGCCCCCCCTCCCCCCTCCAAAACCGACCCCGAAACCGACCCTATTTCTGTCCTCAACGACAGGATTCATCGCGAGTATAGAAAAAGGGGGGTTTCGAGGACTGTTATGGACGCTAAAGAAGCTGATAAGTATATACAAATGGTTAAGGAGCAACAGCAGAGGGGGCTTCAGAAGCTTAAGGGTGATAGAAAGGCTAAAGATGGTTCCATTAGTTATAAGGTGGACCCTTATGCGCTTCGTTCTGGGGATTATGTTGTGCATAAGAAAGTTGGTATTGGTAGGTTTGTTGGGATTAAATTCGATGTTTCCAAGAATTTGGTTGAACATAGTGAGTATGTTTTCATTGAGTATGCTGATGGAATGGCTAAGCTTCCTGTTAAACAAGCTTCTAAAATGCTCTATAGATATAGTCTTCCAAATGAAGACAAAAAGCCTAGGACATTGAGCAAGTTGAGTGATACTAGTGCATGGGAGAAAAAAAAGACTAAAGGGAAGGTTGCCATACAGAAGATGGTTGTTGGCTTGATGGAACTCTATCTGCATAGGCTTAAACAAAGAAGGCCTCCCTATCCCAAAAGTTCTGTCGTGGCTGAATTCGCAGCAAAATTTGCTTATGAACCTACACCGGATCAGAAACAGGCTTTTATTGATGTTGAAAACGATTTGACGGAGCGAGAGACTCCAATGGACAGATTAATATGTGGAGATGTTGGTTTTGGTAAAACTGAGGTCGCGCTGCGTGCTATCCACTGTGTTATTGCAGCTAAAAAACAAGCGATGGTTCTTGCACCGACAATAGTTCTGGCAAAGCAACATTTTGATACTATTTCAGAGCGATTTTCTGTATATCCCGATATCAAAGTTGGACTACTAAGCAGGTTTCAGACCATATCAGAGAAGGAAACATACTTGGAAATGATTAAAAAGGGTGACTTGGATATTATTGTTGGAACTCACGCACTCCTTGGAAAACGTGTTGTTTATAGCAATCTCGGCCTGCTTGTGGTTGACGAGGAACAGAGGTTTGGTGTCAAACAGAAGGAGAGGATAGCTTCTTTTAAAACTTCTGTCGACGTACTTACTTTATCTGCAACTCCTATTCCACGGACTCTTTATTTAGCGCTGACAGGATTTCGTGATGCTAGTTTAATTTTAACTCCACCACCAGAAAGAGTGCCTATAAAGACTCAACTTTCTTCATTCAGTACGGAAAGAGCAATATCAGCGATCAAATATGAGCTTGACCGTGGAGGTCAAGTTTTTTATGTTCTTCCACGTATTAAAGGACTTGAAGAAGCAATGGAATTTCTTGAAGAGGCATTCCCTGATGTGGAAATAGCCGTTGCACATGGGAAGCAATACTTGAAGCAATTAGAGGTTACGATGGAGAAGTTTGCTCTAGGTGAAATAAAAATCCTTATCAGCACAAGTATAGTTGAAAGTGGGCTTGATATTCAAAATGCAAACACCATCATCATTCAGGATGTTCAACTATTTGGTCTTGCACAGTTATACCAGTTGCGTGGAAGGGTTGGGCGAGCAGACAAGGAAGCATACGCATACTTATTTTATCCTGATAAAAATATGCTCTCTGATCAAGCATTGGAGAAACTTGTAGCCCTTGAAGAATGTCGTGAACTTGGTCAAGGTTTCCAACTAGCTGAGAGAGATATGGGTATAAGAGGTTTTGGTACTATTTTCGGCGAGCAACAAACAGGAGATGTTGGAAATGTTGGCATTGACCTTTTCCATGAGATGCTATTTGAGAGCTTATCCAAGGTTGAAGATCACCGTGTTGTATCAGTTCCTTATCACTCAGTGCAGGTTGACTTAAATATCAATCCTCACCTTTCTTCTGAATACATAAACCATCTCGAGAACCCTATGGAAATAATAAACGAGGCCGAGCAAGTTGCCGAGAAAGACATTTGGAGTCTGGTGCAATTCACAGAGAATTTGCGGCGCCAATATGGCAAAGAGCCTCAACCCATGGAGATTATCTTAAAGAAGCTTTATTTGAGGAGAATGGCAGCTGATATAGGGGTAGTCAAAATTTACTCTTCAGGGAAGATGGTATGTATGAAAACAAACATGAGTAAAAAGGTTTTCAAGATGATGACAGAATCAATGACGTCGGATTTATATAAAAATTCATTGGTTTTTGAAGGGGACCAAATTAAGGCTGAACTTCTACTAGAGCTACCGAAAGAACAACTTCTTAATTGGATCTTTAATTGCATGGCTGAACTTCATTCTTCACTAGCTTCCCTCATAAAGTACTAG 2466 0.4148 MASFLTTPHPIPTPFITKPTSSPKPRDFFILNHPFHHQTFKTLVPSKPLSPPNAVYTQGLYAPPPPSKTDPETDPISVLNDRIHREYRKRGVSRTVMDAKEADKYIQMVKEQQQRGLQKLKGDRKAKDGSISYKVDPYALRSGDYVVHKKVGIGRFVGIKFDVSKNLVEHSEYVFIEYADGMAKLPVKQASKMLYRYSLPNEDKKPRTLSKLSDTSAWEKKKTKGKVAIQKMVVGLMELYLHRLKQRRPPYPKSSVVAEFAAKFAYEPTPDQKQAFIDVENDLTERETPMDRLICGDVGFGKTEVALRAIHCVIAAKKQAMVLAPTIVLAKQHFDTISERFSVYPDIKVGLLSRFQTISEKETYLEMIKKGDLDIIVGTHALLGKRVVYSNLGLLVVDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLILTPPPERVPIKTQLSSFSTERAISAIKYELDRGGQVFYVLPRIKGLEEAMEFLEEAFPDVEIAVAHGKQYLKQLEVTMEKFALGEIKILISTSIVESGLDIQNANTIIIQDVQLFGLAQLYQLRGRVGRADKEAYAYLFYPDKNMLSDQALEKLVALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFHEMLFESLSKVEDHRVVSVPYHSVQVDLNINPHLSSEYINHLENPMEIINEAEQVAEKDIWSLVQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVVKIYSSGKMVCMKTNMSKKVFKMMTESMTSDLYKNSLVFEGDQIKAELLLELPKEQLLNWIFNCMAELHSSLASLIKY 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01914 821 Pfam Helicase conserved C-terminal domain 469 575 IPR001650 -
Vifa5g01914 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 590 IPR027417 -
Vifa5g01914 821 MobiDBLite consensus disorder prediction 1 22 - -
Vifa5g01914 821 SUPERFAMILY CarD-like 135 203 IPR036101 -
Vifa5g01914 821 Gene3D - 667 815 IPR037235 -
Vifa5g01914 821 Gene3D - 140 654 IPR027417 -
Vifa5g01914 821 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 283 445 IPR014001 -
Vifa5g01914 821 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 620 IPR001650 -
Vifa5g01914 821 SMART helicmild6 492 576 IPR001650 -
Vifa5g01914 821 Pfam CarD-like/TRCF domain 140 240 IPR003711 -
Vifa5g01914 821 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 680 782 - -
Vifa5g01914 821 CDD DEXHc_TRCF 258 447 - -
Vifa5g01914 821 SMART CarD_TRCF_2 139 241 IPR003711 -
Vifa5g01914 821 Pfam DEAD/DEAH box helicase 290 428 IPR011545 GO:0003676|GO:0005524
Vifa5g01914 821 Gene3D - 143 203 - -
Vifa5g01914 821 SMART ultradead3 264 456 IPR014001 -
Vifa5g01914 821 SUPERFAMILY TRCF domain-like 664 811 IPR037235 -
Vifa5g01914 821 Gene3D - 204 447 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01914 Vifa-Chr5 556180822 556187164 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01914 - - tpra:123888714 1334.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01914 5 556180822 556187164 Vifa5g01914 5 556180822 556187164 ECH