Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01911 ATGGGGTTGAAGCCGAAGGAGGAGCGATACAACCCGGTGAAGAAACCGGGTCCAGTGACAATGGATCATGTTCTGTTAGCATCACAGGAGACAAAGGAGGAAAGGGATAAGAGAATTCGAAGCCTTTTTGATTTTTTCGATAAGGAGAAATTTGGTTATTTGGAATTTAAACACATTGAAGCTGGTTTATCAGCTCTTGAGATTCCTTCTGAGTATAAATATGCTACGGATTTGTTGAATGCTTGCGATGCAAACAAAGATGGGCGTGTTGATTTTGTCGAGTTTAAGAAGTATATGGATGATAAGGAGCTTGAGCTTTACCGGATTTTTCAGGCTATTGATGTTGAACATAATGGGAGTATTTTACCAGAGGAGCTCTGGGAGGCACTTGTTAGTGCAGGGATTAAAATTGATGATGAGGAACTTGCGCATTTCGTCGAGCGTGTTGATAAGGATCACAATGGTGTTATAACATTTGAAGAATGGAGGGATTTTCTGCTGCTTTATCCTCACGAAGCAACTATTGAGAATATTTACCATTATTTGGAGCGCATATGCATGGTCGATATTGGGGAACATGCTGTTATTCCCGCAGGTGTTGGTAAGCACATTCATGCAAGTAGGTATCTGATTGCAGGAGGAGTAGCGGGTGCTGCATCACGGACTGCAACTGCACCTCTCGACCGTCTAAAGGTTGTATTGCAAGTCCAAACGACAAGTGCTCGTATAATACCTGCAGTTAAAGATCTTTGGAAAGCAGGTGGTGTAGTAGGATTTTTTCGAGGCAATGGCTTAAATGTTCTTAAGGTGGCCCCTGAGAGTGCCATTAGATTTTATACCTATGAGATGATGAAAACCTTCATTGTGGAGGCTAAAGGTGGAGAGGGGAAGGCCGATATTGGAGGTATGGGGCGGCTGCTGGCTGGTGGTATAGCTGGAGGTGTAGCTCAAACTGCAATATATCCTATGGATCTTGTTAAGACACGACTACAAACATATGCTTGTGTAAACGGAAAAGTTCCTAGTCTTGGAGCTCTTTCAAAAGATATATTGGTTCAGGAAGGACCCCGAGCTTTTTATAGGGGATTGATTCCTTCTATTCTTGGGATTATCCCGTATGCTGGGATAGATCTAGCTGCTTATGAAACCTTGAAGGAGATGTCAAAAAAGTATATTATTCAGGACGGAGAACCCGGCCCTCTGGTACAATTAGGATGTGGGACGGTATCAGGAGCTCTTGGAGCAACATGTGTTTACCCATTACAGGTCGTCAGAACAAGAATGCAGGCCCAAAGCTCTTATAACGGAATGGGTGATGTATTCAGAAAAACTTTGAAACATGAAGGACTTCGGGGATTCTACAAAGGAATATTTCCGAACTTGCTCAAAGTTGTCCCGTCCGCAAGCATCACTTACATGGTTTATGAGTCTATGAAAAAAAGTTTGGATTTGGAGTGA 1458 0.428 MGLKPKEERYNPVKKPGPVTMDHVLLASQETKEERDKRIRSLFDFFDKEKFGYLEFKHIEAGLSALEIPSEYKYATDLLNACDANKDGRVDFVEFKKYMDDKELELYRIFQAIDVEHNGSILPEELWEALVSAGIKIDDEELAHFVERVDKDHNGVITFEEWRDFLLLYPHEATIENIYHYLERICMVDIGEHAVIPAGVGKHIHASRYLIAGGVAGAASRTATAPLDRLKVVLQVQTTSARIIPAVKDLWKAGGVVGFFRGNGLNVLKVAPESAIRFYTYEMMKTFIVEAKGGEGKADIGGMGRLLAGGIAGGVAQTAIYPMDLVKTRLQTYACVNGKVPSLGALSKDILVQEGPRAFYRGLIPSILGIIPYAGIDLAAYETLKEMSKKYIIQDGEPGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQSSYNGMGDVFRKTLKHEGLRGFYKGIFPNLLKVVPSASITYMVYESMKKSLDLE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01911 485 FunFam Calcium-binding mitochondrial carrier protein SCaMC-1 117 192 - -
Vifa5g01911 485 SUPERFAMILY EF-hand 29 198 IPR011992 -
Vifa5g01911 485 ProSiteProfiles EF-hand calcium-binding domain profile. 137 172 IPR002048 GO:0005509
Vifa5g01911 485 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Vifa5g01911 485 Pfam EF-hand domain pair 67 101 IPR002048 GO:0005509
Vifa5g01911 485 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 287 IPR018108 -
Vifa5g01911 485 Gene3D - 21 182 - -
Vifa5g01911 485 ProSiteProfiles Solute carrier (Solcar) repeat profile. 398 481 IPR018108 -
Vifa5g01911 485 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
Vifa5g01911 485 PANTHER SOLUTE CARRIER FAMILY 25 162 483 - -
Vifa5g01911 485 Gene3D Mitochondrial carrier domain 200 483 IPR023395 -
Vifa5g01911 485 Pfam EF-hand domain pair 105 164 IPR002048 GO:0005509
Vifa5g01911 485 SUPERFAMILY Mitochondrial carrier 202 476 IPR023395 -
Vifa5g01911 485 PRINTS Mitochondrial carrier protein signature 222 236 IPR002067 GO:0055085
Vifa5g01911 485 PRINTS Mitochondrial carrier protein signature 262 282 IPR002067 GO:0055085
Vifa5g01911 485 PRINTS Mitochondrial carrier protein signature 315 333 IPR002067 GO:0055085
Vifa5g01911 485 PRINTS Mitochondrial carrier protein signature 209 222 IPR002067 GO:0055085
Vifa5g01911 485 PRINTS Mitochondrial carrier protein signature 360 378 IPR002067 GO:0055085
Vifa5g01911 485 PRINTS Mitochondrial carrier protein signature 407 429 IPR002067 GO:0055085
Vifa5g01911 485 ProSiteProfiles Solute carrier (Solcar) repeat profile. 300 387 IPR018108 -
Vifa5g01911 485 FunFam Mitochondrial substrate carrier family protein 9 104 - -
Vifa5g01911 485 FunFam Mitochondrial substrate carrier family protein 200 483 - -
Vifa5g01911 485 SMART efh_1 105 133 IPR002048 GO:0005509
Vifa5g01911 485 SMART efh_1 74 102 IPR002048 GO:0005509
Vifa5g01911 485 SMART efh_1 141 169 IPR002048 GO:0005509
Vifa5g01911 485 SMART efh_1 38 66 IPR002048 GO:0005509
Vifa5g01911 485 ProSitePatterns EF-hand calcium-binding domain. 150 162 IPR018247 -
Vifa5g01911 485 Pfam Mitochondrial carrier protein 203 290 IPR018108 -
Vifa5g01911 485 Pfam Mitochondrial carrier protein 399 482 IPR018108 -
Vifa5g01911 485 Pfam Mitochondrial carrier protein 303 390 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01911 Vifa-Chr5 555840805 555844180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01911 6 485 EF-hand Containing Proteins AT5G51050 72.349 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01911 K14684 - gmx:100775805 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01911 5 555840805 555844180 Vifa5g01911 5 555840805 555844180 ECH