Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01669 ATGGAGGTTGTTTGTCACCCTCTCTGCTGTCACACCATCGTAACTGCCAAAAGCCATCGTTCTCATAAACAACCACAGCTTCTCTCTTGTTCGCAACATTTTCCCCTCTTATCTTTCGGCACCACAACCCTATCCCGCCGTCCCTCTCCTTTTGCTCCACCATCAGTTCTGTTTGCGACACCGGAGAATCAATTGAGCGTCGGAGGAGAAGGGGATAATACTCATACAACTGATTCCGCACTTCAAGATTTTTATTCCCTAAGGAAGGATGTTGAAATTGCATCACAGCGTGTCAAAGAGATTAGGGAATCATCTGGTTTGCCACTGTTGGAGCAAGAGGTTGCCACCTTGGAAAAGGAGGCGTCTTGTACCTCCTTTTGGGACGATCGAGCCAAAGCTCAACAGACTCTTTCTACACTGGCTGATGTCAAAGATAAGATAAAATTGCTCAACGAGTACAAAAATCAGGTTGAGGATGCGGAAACAATAGTTATGTTAACAGAGGAAATGGAATCCGTTGATAGAGGGCTATATGAGGAAGCTTCTAGTCTCATTAAAGAACTGAATAAGTCAGTTGATCTGTTTGAGCTGACTCAACTTCTTTCTGGTCCTTACGACAAAGAAGGTGCTGTTATCACTATCACAGCAGGTGCTGGAGGTACTGATGCACAGGACTGGGCCGACATGCTTCTTAGGATGTACGTGAGATGGGGTGAGAAACAGAGATACAAAACCAGAGTGGTTGAGAAATCTCTTGGAGAAGAAGCTGGAATAAAATCTGCCACCATCGAAGTTGAAGGTCGTTATGCGTATGGGTACTTGTCCGGGGAGAAAGGGACACATCGTATTGTTCGGCAATCCCCTTTTAATTCCAAAGGTCTTCGTCAGACGAGCTTTTCTGGTATTGAAGTCATGCCACTTCTTCCAGAAGAATCTCTGAATGTTGAAATTCCCGAAGAGGACCTGGAGATTAGTTTTTCAAGAGCAGGTGGAAAAGGAGGTCAGAATGTTAACAAGGTTGAAACTGCCGTTCGAATCACACATATCCCAACTGGTGTCACTCTTCGCTGCACAGAGGAAAGATCCCAAATAGCAAATAAGATAAAGGCTTTAAGCCGTTTGAAAGCCAAGCTGTTAGTGATAGCTGAGGAGCAGCGTGCAACTGAGTTTAAGCAGATTCGAGGGGACGTAGTGAAGGCTGAATGGGGACAACAAATAAGAAATTATGTCTTCCATCCATACAAACTAGTAAAGGATGTAAGAACAGGACATGAAACGCCAGATATAACCTCTGTTATGGATGGAGAGTTGGATCCCTTCATCAAATCTTACCTCAAACACAAGTATAGTATGACACTGTCTACAAGTGGGGTCAACTAA 1380 0.4428 MEVVCHPLCCHTIVTAKSHRSHKQPQLLSCSQHFPLLSFGTTTLSRRPSPFAPPSVLFATPENQLSVGGEGDNTHTTDSALQDFYSLRKDVEIASQRVKEIRESSGLPLLEQEVATLEKEASCTSFWDDRAKAQQTLSTLADVKDKIKLLNEYKNQVEDAETIVMLTEEMESVDRGLYEEASSLIKELNKSVDLFELTQLLSGPYDKEGAVITITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGIEVMPLLPEESLNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQIANKIKALSRLKAKLLVIAEEQRATEFKQIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTGHETPDITSVMDGELDPFIKSYLKHKYSMTLSTSGVN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01669 459 Gene3D Release factor 90 205 - -
Vifa5g01669 459 Pfam PCRF domain 110 301 IPR005139 GO:0006415
Vifa5g01669 459 Gene3D - 212 442 - -
Vifa5g01669 459 Gene3D - 308 404 - -
Vifa5g01669 459 SUPERFAMILY Release factor 110 450 IPR045853 -
Vifa5g01669 459 NCBIfam peptide chain release factor 2 94 446 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vifa5g01669 459 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 328 344 IPR000352 GO:0003747|GO:0006415
Vifa5g01669 459 Coils Coil 140 170 - -
Vifa5g01669 459 Pfam RF-1 domain 313 421 IPR000352 GO:0003747|GO:0006415
Vifa5g01669 459 Hamap Peptide chain release factor 2 [prfB]. 83 449 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vifa5g01669 459 SMART PCRF_a_2 165 277 IPR005139 GO:0006415
Vifa5g01669 459 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 82 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01669 Vifa-Chr5 489994853 489997606 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01669 K02836 - gmx:100775574 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01669 5 489994853 489997606 Vifa5g01669 5 489994853 489997606 ECH