Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01666 ATGTTGGTACTGATCCTTTTCATTTTCCTCTTCTCTCTCTTCTTATTCAAATTCGCCACAGCATATGGCGATTTCACTTTGATGTCGAAGAAGCATCCAAAACGCGAATTAATTGAAGATAAGGTTTTTTGGATTACTGGTGCCAGCCGTGGAATTGGGGAAGTTCTAGCTCAACAGCTTGCAAGTTTAGGTGCCAAGTTGATAATCTCTGCAAGGAATGAAGCTGACCTAAACCGAGTAAAGTCACAGCTGAAAGGTAAGCATGCACCCGATGGAGTCAAGATTTTACTGTTGGATTTAACATCTGGAGAAGATTCTCTTAGGAGGGTTGTCGATGTAGCAGAATCCCTTTTTCCGGATTCTGGTGTAGATTATATGATTCATAATGCTGCGTATGAGCGTCCAAAATCATCCATTTTAGATGTAACCGAGGGTAGTCTCAAGGCAATCTTTGATGTCAATGTTCTGGGGACAATAACTCTTACAAAGCTCCTGACACCTTTCATGTTGAAGAGGGGTAAAGGTCATTTTGTGGTGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTATATACTCGGCTTCTAAATTTGCATTAAATGGGTACTTCCATTCCTTGCGTTCAGAGCTCTGTCAGAAAGGAATCCAGGTAACTGTTGTCTGTCCTGGTCCTATACAAACAGTAAATAACGCTGGATCGCAGGTTCCATCTGAGAAGCGTGTGTCAGCCGAGAAGTGTGCCGAGTTGACGATTATTGCCGCAACCCATAACTTGAAGGAAGCTTGGATATCATATCAGCCCGTGCTTGTTGTCATGTACCTTGTTCAGTACATGCCAACTATTGGTTATTGGCTCATGGACAAGGTTGGTAAAAGTCGAGTTGAGGCTGCTGCAGAGAAGGGAAGCACATATTCTTTGAGCCTACTATTTGGAAAAAAGAAGGCAGGGTGA 960 0.4354 MLVLILFIFLFSLFLFKFATAYGDFTLMSKKHPKRELIEDKVFWITGASRGIGEVLAQQLASLGAKLIISARNEADLNRVKSQLKGKHAPDGVKILLLDLTSGEDSLRRVVDVAESLFPDSGVDYMIHNAAYERPKSSILDVTEGSLKAIFDVNVLGTITLTKLLTPFMLKRGKGHFVVMSSAAGKTPAPGQAIYSASKFALNGYFHSLRSELCQKGIQVTVVCPGPIQTVNNAGSQVPSEKRVSAEKCAELTIIAATHNLKEAWISYQPVLVVMYLVQYMPTIGYWLMDKVGKSRVEAAAEKGSTYSLSLLFGKKKAG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01666 319 Gene3D - 23 297 - -
Vifa5g01666 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 290 IPR036291 -
Vifa5g01666 319 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 182 210 IPR020904 GO:0016491
Vifa5g01666 319 Pfam short chain dehydrogenase 41 234 IPR002347 -
Vifa5g01666 319 PRINTS Glucose/ribitol dehydrogenase family signature 121 132 IPR002347 -
Vifa5g01666 319 PRINTS Glucose/ribitol dehydrogenase family signature 195 214 IPR002347 -
Vifa5g01666 319 PRINTS Glucose/ribitol dehydrogenase family signature 216 233 IPR002347 -
Vifa5g01666 319 PRINTS Glucose/ribitol dehydrogenase family signature 169 185 IPR002347 -
Vifa5g01666 319 PRINTS Glucose/ribitol dehydrogenase family signature 42 59 IPR002347 -
Vifa5g01666 319 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 2 317 - -
Vifa5g01666 319 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 41 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01666 Vifa-Chr5 489966766 489981260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01666 3 225 Lipid Metabolism Gene Families AT1G67730 30.769 2.41e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01666 K11165 - gmx:100795991 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01666 5 489966766 489981260 Vifa5g01666 5 489966766 489981260 ECH