Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01663 ATGGCGGAAAATGTTTCAACTGATCTCAAGATGTTTATGTTATTCTGTTTGTTGCTAGTTCAAATTTCCTTTTCGGAAATCATTTTTGAAGAGCGATTCGAAGATGGATGGCAAAGTCGGTGGGTAAAATCGGACTGGAAAAGAAGCGAAGGCAAAGCCGGTTCGTTCAAGCACACGGCTGGGAAATGGGCTGGAGATCCCGATGATAAAGGTATCCAAACATCTAATGACGCAAAGCACTTTGCCATCTCTGCGAAGATACCGGAATTCACTAACAAGAACCGAACACTGGTTTTTCAGTACTCTATAAAATTCGAACAAGAGATTGAGTGTGGAGGAGGTTACATGAAACTCCTCTCTGGATTTGTTAATCAAAAGAAGTTTGGTGGGGATACACCTTATAGTGTAATGTTTGGACCAGATTTATGCGGCACGGACACGAAGAAGCTCCATGTCATAGTCTCGTACCAGGGTCAAAATTACCCGATAAAGAAGGACCTGCAGTGTGAAACAGACAAGTTGACTCATTTCTACACATTCATCCTCAGGCCGGATGCTACATACAGCGTCCTGGTTGATAATAGAGAGAGGGAATCCGGTAGCATGTATACAGATTGGGATATTCTCCCTCCACGTAAAATCAAAGACGTCAAGGCAAAAAAGCCTGCAGACTGGGATGACAGAGAATACATTGAAGACCCTAATTCGGTCAAGCCTGAGGGATATGATTCAATCCCAGCAGAAATTCCTGACCCGAAGGCTAAAGAGCCTGATAGTTGGGATGAAGATGAAGATGGAATATGGAAACGGCCGAAGATCCCAAATCCAGCATACAAAGGACCATGGAAACGAAAGAAAATCAAGAATCCTAATTACAAAGGCAAATGGAAAACTCCATGGTTAGATAATCCAGAGTTCGAAGATGACCCCGATCTTTATGTGCTTAAGCCTATCAAATATGTCGGCATAGAAGTTTGGCAGGTTAAAGGTGGTTCGGTATTTGACAACATTTTGATTTGTGATGATCCTGATTATGCAAAACAAGTTGTTGATGAAGTTTTTGCCAACAGAGAGATTGAAAAGGAGGGTTTTGAGGAAGCAGAGAAAATAAAGAAAGCCCAAGAAGAGGAGGAGGCTCAAAGAGCAAGAGAAGAAGGTGAAAGGAGGAGAAAAGATAGAGGTTATGATCGACACCGGAACAGACATAGAGACAGATATAGAAAGCATCGCCGTGATTACATGGACGATTATCATGATGAACTCTGA 1266 0.4226 MAENVSTDLKMFMLFCLLLVQISFSEIIFEERFEDGWQSRWVKSDWKRSEGKAGSFKHTAGKWAGDPDDKGIQTSNDAKHFAISAKIPEFTNKNRTLVFQYSIKFEQEIECGGGYMKLLSGFVNQKKFGGDTPYSVMFGPDLCGTDTKKLHVIVSYQGQNYPIKKDLQCETDKLTHFYTFILRPDATYSVLVDNRERESGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPNSVKPEGYDSIPAEIPDPKAKEPDSWDEDEDGIWKRPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWLDNPEFEDDPDLYVLKPIKYVGIEVWQVKGGSVFDNILICDDPDYAKQVVDEVFANREIEKEGFEEAEKIKKAQEEEEAQRAREEGERRRKDRGYDRHRNRHRDRYRKHRRDYMDDYHDEL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01663 421 Gene3D Calreticulin/calnexin, P domain 211 312 IPR009033 GO:0005509|GO:0005515
Vifa5g01663 421 MobiDBLite consensus disorder prediction 365 409 - -
Vifa5g01663 421 MobiDBLite consensus disorder prediction 249 270 - -
Vifa5g01663 421 Coils Coil 356 392 - -
Vifa5g01663 421 MobiDBLite consensus disorder prediction 225 271 - -
Vifa5g01663 421 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 224 IPR013320 -
Vifa5g01663 421 ProSitePatterns Calreticulin family signature 2. 136 144 IPR018124 GO:0005509
Vifa5g01663 421 PANTHER CALRETICULIN AND CALNEXIN 9 385 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa5g01663 421 PRINTS Calreticulin signature 249 271 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa5g01663 421 PRINTS Calreticulin signature 132 148 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa5g01663 421 PRINTS Calreticulin signature 221 234 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa5g01663 421 PRINTS Calreticulin signature 106 124 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa5g01663 421 PRINTS Calreticulin signature 287 306 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa5g01663 421 PRINTS Calreticulin signature 320 340 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa5g01663 421 Gene3D - 26 386 - -
Vifa5g01663 421 MobiDBLite consensus disorder prediction 365 393 - -
Vifa5g01663 421 PIRSF Calreticulin 6 414 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa5g01663 421 FunFam Calreticulin 211 312 - -
Vifa5g01663 421 FunFam Calreticulin 1b 26 211 - -
Vifa5g01663 421 MobiDBLite consensus disorder prediction 394 408 - -
Vifa5g01663 421 Pfam Calreticulin family 30 265 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa5g01663 421 Pfam Calreticulin family 266 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa5g01663 421 SUPERFAMILY P-domain of calnexin/calreticulin 207 322 IPR009033 GO:0005509|GO:0005515
Vifa5g01663 421 ProSitePatterns Calreticulin family signature 1. 104 119 IPR018124 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01663 Vifa-Chr5 489094421 489097592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01663 10 342 Miscellaneous Gene Families AT5G61790 34.343 2.36e-62 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01663 K08057 - gmx:100801827 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01663 5 489094421 489097592 Vifa5g01663 5 489094421 489097592 ECH