Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01624 ATGGCACCACCGCGACTCAACAACCGAAGAACCGTTCTCGCTCTTCGCCTCTTCATTCTCCCGTGCTTAATATTTCAAACCTTCGCTCAGGATTCTCTGGCGCATAATGAGAGGCAAGATTCCGGTGGATCTGTGGATCTCGGTCGCCGTGCAAAAGTTGCATTGAGTGGTTTAGAGAATGGTGCGGTTCTTCCTCTTAGCTTGGATTCCTCAGGTGTTGGACTCTTCGATGCTTTCTTTGCTAGTTTATCAATGATCCTCGTCAGCGAGATTGGGGATGAGACATTTATAATAGCAGCTCTCATGGCTATGCGTCACCCTAAATCAATTGTTTTGTCCGGTGCACTCACAGCCTTGATTATAATGACAGTACTTTCAACGGGACTAGGAAGGATTGTGCCAAATTTGATTTCAAAGAAGCATACAAATAGTGCTGCTACAGTTCTCTATCTTTTCTTTGGGTTACGACTGCTGTACATTGCTTGGAGATCAGATCCAAAATCTTCACAGAAGAAAGAAATGGAAGAAGTTGAAGAAAAACTTGAAGGTGGGCAAGGGAAAACTTCATACCGGCGGTTCCTTTCAAGATTTTGTACACCTATATTTTTGGAGTCATTTATTTTAACATTCCTTGCCGAGTGGGGTGACCGTAGCCAGATTGCAACAATTGCACTGGCAACACACAAAAACGCAATTGGAGTAGCAGTTGGGGCCACTATAGGACACACAATCTGTACCTCAGTAGCAGTGGTTGGAGGAAGCATGCTGGCGTCTAGGATTTCCCAACGTTCTGTAGCCACTGTTGGTGGCCTTCTCTTCCTCGGCTTTTCTTTGTCTTCATACTTCTACCCTCCTCTAGATTAA 864 0.4491 MAPPRLNNRRTVLALRLFILPCLIFQTFAQDSLAHNERQDSGGSVDLGRRAKVALSGLENGAVLPLSLDSSGVGLFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALTALIIMTVLSTGLGRIVPNLISKKHTNSAATVLYLFFGLRLLYIAWRSDPKSSQKKEMEEVEEKLEGGQGKTSYRRFLSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVAVGATIGHTICTSVAVVGGSMLASRISQRSVATVGGLLFLGFSLSSYFYPPLD 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01624 287 Coils Coil 167 187 - -
Vifa5g01624 287 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 62 283 IPR001727 -
Vifa5g01624 287 Pfam Uncharacterized protein family UPF0016 204 276 IPR001727 -
Vifa5g01624 287 Pfam Uncharacterized protein family UPF0016 81 154 IPR001727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01624 Vifa-Chr5 467709880 467712713 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01624 K23541 - gmx:100785207 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01624 5 467709880 467712713 Vifa5g01624 5 467709880 467712713 ECH