Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00564 ATGCCGGAAGAAGAATTGGTGGAGCTCAAGTTCCGATTATACGATGGATCCGATATTGGACCGTTTCGGTATTCACCGAGTTCAACTGTTTCTATGCTCAAGGAAAGGATTTTCGCTGAGTGGCCTAAAGACAAGAAAATCATACCAAAGGCAGCAAATGATATAAAACTCATAAATGCTGGCAAAATTTTGGAGAACAACAAGACGGTTGGCCAGTGTAGAGTGCCTTTTGGTGAGCTTCCTAAGGGGGTCATCACCATGCATGTTGTTGTCCAGCCATCTTTGGCAAAAGCAAAATCAGACAAAGTTGATGATACACCCAGAAAACATTTTTGTGGGTGTACAATATTGTGA 354 0.4209 MPEEELVELKFRLYDGSDIGPFRYSPSSTVSMLKERIFAEWPKDKKIIPKAANDIKLINAGKILENNKTVGQCRVPFGELPKGVITMHVVVQPSLAKAKSDKVDDTPRKHFCGCTIL 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00564 117 CDD Ubl_MUBs_plant 6 93 - -
Vifa5g00564 117 Gene3D - 1 100 - -
Vifa5g00564 117 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 117 IPR040015 -
Vifa5g00564 117 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 115 IPR039540 -
Vifa5g00564 117 SUPERFAMILY Ubiquitin-like 2 96 IPR029071 -
Vifa5g00564 117 PIRSF MUB 1 117 IPR017000 -
Vifa5g00564 117 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00564 Vifa-Chr5 126561145 126567300 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00564 - - gmx:100500075 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00564 5 126561145 126567300 Vifa5g00564 5 126561145 126567300 ECH