Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00486 ATGGGCGCTCCAATCATTGAAAGTTTGAGAAAGCACACAGAGGCATATTTGGATTGTCACCTGATGGTTACAAATCCTCTTGATTATGTTGAACCTTTGGGAAAAGCTGGTGCTTCTGGCTTTACATTTCATATAGAGACATCAAAAGACAACTGGAAAGAACTTATCCGAAGTATTAAGTCACAAGGCATGAAGCCTGGTGTAGCGATAAAGCCTGGGACGTTGGTTGAAGAGGTTTTTCCTCTGGTTGAATCTGAAAATCCTGTGGAAATGGTTCTTGTCATGACTGTAGAGCCTGGATTTGGAGGACAAAAATTCATGCCAGAGATGATGGAAAAGGTTCAAATACTGAGGAAGAAGTATCCATTACTTGACATAGAGGTTGATGGTGGATTAGGGCCTTCAACCATAGACACAGCTGCATCAGCAGGAGCGAATTGCATTGTTGCTGGAAGTTCAGTGTTTGGAGCCCCTGAGCCAGCTCAAGTTATATCCTTACTGAGGAATTCTCTAGAGAAAGCACAGCAAACAAAGTAA 537 0.4246 MGAPIIESLRKHTEAYLDCHLMVTNPLDYVEPLGKAGASGFTFHIETSKDNWKELIRSIKSQGMKPGVAIKPGTLVEEVFPLVESENPVEMVLVMTVEPGFGGQKFMPEMMEKVQILRKKYPLLDIEVDGGLGPSTIDTAASAGANCIVAGSSVFGAPEPAQVISLLRNSLEKAQQTK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00486 178 CDD RPE 1 168 IPR000056 GO:0005975|GO:0016857
Vifa5g00486 178 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 1 176 IPR000056 GO:0005975|GO:0016857
Vifa5g00486 178 SUPERFAMILY Ribulose-phoshate binding barrel 2 173 IPR011060 -
Vifa5g00486 178 FunFam ribulose-phosphate 3-epimerase isoform X2 1 178 - -
Vifa5g00486 178 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 92 114 IPR000056 GO:0005975|GO:0016857
Vifa5g00486 178 Gene3D Aldolase class I 1 178 IPR013785 -
Vifa5g00486 178 Pfam Ribulose-phosphate 3 epimerase family 1 155 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00486 Vifa-Chr5 113017530 113019096 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00486 K01783 - gmx:100500085 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00486 5 113017530 113019096 Vifa5g00486 5 113017530 113019096 ECH