Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00454 ATGGGTAGCACATTCAATTCACAGATTTTAGTGGAAAAACTAGCCAAGCTGAATGGCTCGCAGACAAGCATAGAGACTTTGTCACATTGGTGCATATTTCATATGAACAAAGCCAAACAAGTTGTCGAAACGTGGGATAAACAGTTCCATTGCTCTCCTCATGAAAAGAAATTGACATTTCTGTTCCTTGCAAATGATATTTTACAAAACAGCAGGCGAAAGGGTTCTGAATTTGTTGGTGAATTTTGGAAGGTTCTTCCAGATTGTCTTCGAGATGTCACTCAAAATGGAGACGACCATGCAAGGAATGAAGCATTTCGACTGATTGGTATATGGGAAGAAAGAAAAGTTTTTGGTTCTCGTGGTCAAAGTCTTAAGGAAGAATTTATTGGGAAGCATGCGGAAAACAATAACCGTGATTTGAAACCTATGAACGCGAAACCTACAAATGCGAAACCTATGAACGTGAAACTGAGGCCATCTGCCGGAAATGTGTTGGATAAAATAGTTTCGGGCTATCATCATATTTATGCAGGGCAGACAGATGAAGATGTTGTATTAAGCAAATGCAGGAATGCCATTAGCTTTCTTGAGAAAGCAGATAAGGAAATAGTTCACGGGAACTTCCATGGATCTGCAGTAGTGAATGACCTACAGGGGCATAATGCCATACTAAAGGACTGCATTGAGCAGTTAACAACACTAGAATCATCAAGAGCTGGCCTTGTGTCTCATCTGAGAGAGGCTCTTCAGGATCAGGAATTCAAGCTGGGTCAAGTTCGTAGCCAGATCCAGGCTGCAAGTGCTCAGTGGGAACATGCGAACAATACTTGCCAACAATTACTGAGCCACAACAATGTTCAGTCATTAGTTGAACAGAGCTCAAAGGAAATTCAGAGCTCCATGGCACCTGCAAGTTTTATTTCTGGCGACAGAGAGCTATCAGCCCCATTAATGTACTCACCACAAATTATGTTTCCTCAAAATTCTGGACTCGGTGAGGGAGATCCACGCAAGTCTGCAGCCGCTGCAGTGGCAGCAAAGCTGACTGCATCCACATCCTCCGTCCAAATGCTGTCTTATGTGCTATCCTCTTTAGCATCAGAAGGTGTCATAGGCAATCCGATGACAGAGTCTTCTACTGATTATCACTCTGATAAGAGGACTAAGCTTGAGAATGATGGGTCATCTTATGTGCCATCTCACGTGCCATCTCAGAATCCTCAACAACCACTTCCTCCCTTTTCGCTTTCTGAACCTACCCAACACTATGCATCTTCATCCAACCAGCAATCTACTCCAAATGAGCCACCACCTCCACCCTCATCATCACCTCCCCCACTACCCCCACCGCCACCAATGCCTCAACAATACCCTGTGCCGCAGTTCATGCAGAATGTAGGGCCTGTTAACAATATGGCATATAGCTATGGCGTGATTCAACAGCCGTCAATGGCAGCCTATCCTGGAGTTGGGATTTCCATGAACAATGTATCACCTTATACACCTCCAATGAATCCATATCAGGGTTTTCAGGGTTCTGATGGAAACTACTACAATCCGTCCTCCTCAATGCCTATGGTCCCCATCTCGCGCCAATAG 1602 0.4438 MGSTFNSQILVEKLAKLNGSQTSIETLSHWCIFHMNKAKQVVETWDKQFHCSPHEKKLTFLFLANDILQNSRRKGSEFVGEFWKVLPDCLRDVTQNGDDHARNEAFRLIGIWEERKVFGSRGQSLKEEFIGKHAENNNRDLKPMNAKPTNAKPMNVKLRPSAGNVLDKIVSGYHHIYAGQTDEDVVLSKCRNAISFLEKADKEIVHGNFHGSAVVNDLQGHNAILKDCIEQLTTLESSRAGLVSHLREALQDQEFKLGQVRSQIQAASAQWEHANNTCQQLLSHNNVQSLVEQSSKEIQSSMAPASFISGDRELSAPLMYSPQIMFPQNSGLGEGDPRKSAAAAVAAKLTASTSSVQMLSYVLSSLASEGVIGNPMTESSTDYHSDKRTKLENDGSSYVPSHVPSQNPQQPLPPFSLSEPTQHYASSSNQQSTPNEPPPPPSSSPPPLPPPPPMPQQYPVPQFMQNVGPVNNMAYSYGVIQQPSMAAYPGVGISMNNVSPYTPPMNPYQGFQGSDGNYYNPSSSMPMVPISRQ 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00454 533 MobiDBLite consensus disorder prediction 433 459 - -
Vifa5g00454 533 SUPERFAMILY ENTH/VHS domain 12 118 IPR008942 -
Vifa5g00454 533 SMART 558neu5 9 130 IPR006569 -
Vifa5g00454 533 Gene3D - 2 130 IPR008942 -
Vifa5g00454 533 MobiDBLite consensus disorder prediction 371 463 - -
Vifa5g00454 533 MobiDBLite consensus disorder prediction 506 533 - -
Vifa5g00454 533 FunFam ENTH/VHS family protein isoform 1 2 130 - -
Vifa5g00454 533 CDD CID_RPRD_like 8 128 - -
Vifa5g00454 533 MobiDBLite consensus disorder prediction 416 432 - -
Vifa5g00454 533 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 1 515 - -
Vifa5g00454 533 ProSiteProfiles CID domain profile. 2 134 IPR006569 -
Vifa5g00454 533 Pfam CID domain 9 120 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00454 Vifa-Chr5 100800488 100807907 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00454 K15559 - gmx:100806108 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00454 5 100800488 100807907 Vifa5g00454 5 100800488 100807907 ECH