Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04922 ATGGGTTTTGATAACGAGTGCATAATCAATATTCAATCTCTTGCTGGAGAGTATTTTTGTCCCGTTTGTCGTCTTCTCGTGTTTCCGAACGAAGCTTTGCAGTCACAATGTACTCATTTATATTGCAAGCCGTGTTTGACGTATGTTGTGAGTACTACCAGGGCTTGTCCTTATGATGGTTATTTGGTGACCGAGGCCGATTCCAAGCCTTTGGTAGAGACGAATAAGGCACTTGCTGAAACTATTGGGAAAATAGCAGTTCATTGCTTGTATCATAGGAGTGGATGCTCATGGCAAGGAAGTTTGTCTGAGTGTACATCTCATTGTTCTGGATGTACTTTTGGCAACTCTCCTGTTGTTTGCAACAGATGTGGGATTCAAATAGTGCACAGTCAAGTTCAAGAACATGCTCAAACTTGCTCTGGTGTGCAAGGTCAGGTCCAGCAGGGGGGCGTTGCCCAGGATCCTTCAGCTACCAGTGCTTCTGCTGTTGCACCTACTGATCAAAACCAGGCTGCGGCTCCAGTTGCAGCAACAGCTTCACAACCAGTGACTTCTCAATCAGTGGTTGCAACTAGTGCAGCTGGGCATGTTTCAAATCAGCTACCCAACCCGGCATCTCAAACCCAAGCTTTAGGCCAAGTTGCTGTGCAGCCAACAGCAGAGCAATGGTATCAGCAGCAACAGTATCAACAATATTACCAGCAATACCCTGGACAAGATCCATACCAACAGCAATATCAGCAGTATTACCCTTATCAACAGTCTGCTGTTCCACAATACCAACAGGCCTATGCCCAGCCTTCACCTCAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGTCGCAGCCTCAAGCACAGCCTCAGGCTCAAGGACTGTCTCAATCAGTTTCACATGTGCAGACTCCTGCAGCCGCACAATCTCAGAATCATATGCAAGTTCACCAACAGCCACAGCAGCTTCAACCTGCTGTACAGCCACATGGGCAGATGAGTCACCCACCTGGCCACAGTCAAGCCTTCCCTCAGCCTCAGTCTTATCCTTACTCCCAAGTTCAGTCTCATTCTGGGCAACCCCAACAAAATATGCAAATCCCTCCTTATCAGCAACCTCATCCTCAAATGCAGCAGCATCCACAACCTCAAAATCAGCAACCAGTTCAGAAGTATCCTGTTCCTCAACCTCAAGTTCATCCACAAATGCAACCTAATGCTCCAGTTCAACATCCTTCTCAGCCTCAGATGCAATCTCACCTTCCCATGCCTCCTAATGTACACGCTCAAGGGCAAAATACAATGTCACATGCAGTTACAGGTCATCACTCTTATCCCCAACCTCTGCCTCATCAGAATATGCAAGTGGGAGCCCCTCAATCTAGCATGCACTTGAATCCTCAAAATGGGCAGCTCCAGGGACAGCATCCTGTTCAGATGCAGAATCAGTTTCCTCAGCAAACTCCAATGATGCGCCCAAATCAGTCTCATGCTATGTATCCTAATCAGCAGCTAGCTTTGTTGCCTTCATCTGTTCAAGGTCAAAGCACCCCTCCTCTGCAACCGCAGCCGGGATACACTCCTAATCAGCAAGCTGGACAAACCAACCATCGTCCTATTTTGCAACCGGTTCAACAAATATTACCTCAGCAACCATTTGCACAACACCAGACCCCTATGCCCTCTCATCTTCGACCACAAGGTCCAGTACACTCATTTCCCAAGCATGCTTATCCCCAGTCCAAGGGTAATACTACACTATCTCAAAATGCCGTTGGAAGGCCTTCAATTCCCAATCATGCAGGACATGTACAGCCATTTGTACACTCTGCCAATACAATTCCTGTTAGACCAGGGAATCAGAATATGTTGGTTGGGACCAATAATCAAGTGCAGTCAAGGGCACCAGAACCAATTGAAAGACAAGGTGATGTCACTGAGCAACAAACTGACTCTGCCTCAGGAAAACTTGGAAAAAATGAGTTGAAATCTGAAAAAGAAACAAGTTTGAAATCCACAGAGGTTGGGAGTAAGCAAAATAGTGAAGATCCACACTCTGTGAAGAATTTAGGCCCAAATGCCAATGCATTAGAAAATGGTGATACATTGAATAAGAATGTTGGAAAGGGAGAGGCTTCTGAAAGCACTGAAGTTCAACATAATAGTAAAGAACATTCTGTTGTACATGACAATGAGATTCAAGGTGGACCTACACTGAAGACAGAGACAAAACTCTCTGAATCTGAAACTGATAAACTTCACAGTGATGATATTTGTACTCCAAGACCTCCTCCTTCTGGTGCTGACAATCCTGCACCAGCTGTCTCTCAGACCAATGGTGTTCATGGACCTGGCATTGATGAATATAGAGGGATGCAGTCTGGGGGCTTAGCTCAGCCATCTCATCCAGTCTGGGGGTCTTCTGCAGTTTTGACCCCACATCCAACAGGTCCAAATCAGCCTCTTTCTGCAGCAAACTCTTCAACTCTTCTCAGGAATCATGGAACTGCACCTGCACTTCATTCAGGGCAGGCCTTAAACTCCATGGATAATTTTCAGCCAACCATGTTTAAGCAACCACACGGTTCTGATGTTCAGTTTAATATTCCAGGCCGCAGCTTTCAACATCAGCCTCATGGACCTCCAGCAGGACCATATAACCAAGTTCATGAACCACCTTTCCATACTGGAGCTTCCAATTTGTCTCGAAGTGGAGGACCACAGTTTGGTGCCCCACCACATGGAGATATGCACGGTGGAATAACAGCCAACTTTCCACCACATGCTCCTGAAGGTTTTGGTGTGCAGGATGAAAGGTTCAAATCTTTCCAAATTCCTAGTCAACCAAATATTGATCGGAGAGAGTTTGAAGATGATCTCAAGAAATTCCCCAGGCATCCTTTGGATGCTGAACCAGGTTCTAAATATGGAAATTATTCATTAGGTCTACATGAAGCTGGAAAGAGACCAGTTGGCTTTCATGATGATGCCATCAAGAAGCCAGCTTCGACTCTTCATCCTGGTCATCTTGGACCAGGTCCTGGATATGGGATACATCCTATGGATGGTATGGCTCCAAGAAGCCCTGGTAGTGAATACACGGATATGCCTTCCCGTAGATTTGGGCCCCTCTCTGGTGGTCTTATTAGCAAGTCAGGTATAGATGATTTTGAAGGCAGAACTGCAAGTCGATTTGGTGATTCAGTTGGCAATGCATTCCGTGATGGTCGGTTTCCTCATCCCCCTAGCCATTTGCATAGAGATGAGTTTGACGGTTTTGGTAATTTTCGAATGGGCGAACATCCAAGGAGGGGTAATTTCACTGGTCAGGACGAATTTGCTGGCCATTTCCAAAGGGGTGAACATTTGGGTCCACCTAATTTTCCTAGACATTTGCGGCTGGGGGAGCGTAGTGGTTTTGGGGATCATCCTGGTCATATGCGAGCCTTTGAACTTAGTGGTTCTCGGAGTTTTGAATCTTTTACCCAAGGCAGCAGGCCAGGTCATCCACAGCTTGGTGAACCTGGGTTTAGGAGCAGCTTTTCCCTTACAGGATTTAACAACGATGCTGGATTTTTAACTGGAGATACCCGGCCGTTTGATAATCCGAGGAGAAGAAAGGCTATAAGTACGGGGTGGTGCCGGATATGTAAAGTTGACTGTGAAACAGTTGAAGGTTTGGAATTGCATTCTCAAACAAGGGAGCACCAGAAGATGGCTATGGATGTAGTTAAAGCAATCAAACAAAATGCGAAGAAACATAAATTAATGCTCAGTGAACAATCCTCAGTTGAAGATGGAAATAGAACACGGGCTACTGGTTTTGAGGGCCATGGAAATAAGCATTAA 3885 0.4633 MGFDNECIINIQSLAGEYFCPVCRLLVFPNEALQSQCTHLYCKPCLTYVVSTTRACPYDGYLVTEADSKPLVETNKALAETIGKIAVHCLYHRSGCSWQGSLSECTSHCSGCTFGNSPVVCNRCGIQIVHSQVQEHAQTCSGVQGQVQQGGVAQDPSATSASAVAPTDQNQAAAPVAATASQPVTSQSVVATSAAGHVSNQLPNPASQTQALGQVAVQPTAEQWYQQQQYQQYYQQYPGQDPYQQQYQQYYPYQQSAVPQYQQAYAQPSPQPQPQPQPQPQPQPQPQPQPQPQPQSQPQAQPQAQGLSQSVSHVQTPAAAQSQNHMQVHQQPQQLQPAVQPHGQMSHPPGHSQAFPQPQSYPYSQVQSHSGQPQQNMQIPPYQQPHPQMQQHPQPQNQQPVQKYPVPQPQVHPQMQPNAPVQHPSQPQMQSHLPMPPNVHAQGQNTMSHAVTGHHSYPQPLPHQNMQVGAPQSSMHLNPQNGQLQGQHPVQMQNQFPQQTPMMRPNQSHAMYPNQQLALLPSSVQGQSTPPLQPQPGYTPNQQAGQTNHRPILQPVQQILPQQPFAQHQTPMPSHLRPQGPVHSFPKHAYPQSKGNTTLSQNAVGRPSIPNHAGHVQPFVHSANTIPVRPGNQNMLVGTNNQVQSRAPEPIERQGDVTEQQTDSASGKLGKNELKSEKETSLKSTEVGSKQNSEDPHSVKNLGPNANALENGDTLNKNVGKGEASESTEVQHNSKEHSVVHDNEIQGGPTLKTETKLSESETDKLHSDDICTPRPPPSGADNPAPAVSQTNGVHGPGIDEYRGMQSGGLAQPSHPVWGSSAVLTPHPTGPNQPLSAANSSTLLRNHGTAPALHSGQALNSMDNFQPTMFKQPHGSDVQFNIPGRSFQHQPHGPPAGPYNQVHEPPFHTGASNLSRSGGPQFGAPPHGDMHGGITANFPPHAPEGFGVQDERFKSFQIPSQPNIDRREFEDDLKKFPRHPLDAEPGSKYGNYSLGLHEAGKRPVGFHDDAIKKPASTLHPGHLGPGPGYGIHPMDGMAPRSPGSEYTDMPSRRFGPLSGGLISKSGIDDFEGRTASRFGDSVGNAFRDGRFPHPPSHLHRDEFDGFGNFRMGEHPRRGNFTGQDEFAGHFQRGEHLGPPNFPRHLRLGERSGFGDHPGHMRAFELSGSRSFESFTQGSRPGHPQLGEPGFRSSFSLTGFNNDAGFLTGDTRPFDNPRRRKAISTGWCRICKVDCETVEGLELHSQTREHQKMAMDVVKAIKQNAKKHKLMLSEQSSVEDGNRTRATGFEGHGNKH 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04922 1294 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1A-LIKE 1 994 - -
Vifa4g04922 1294 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Vifa4g04922 1294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 122 IPR013083 -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 269 297 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 902 933 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 670 684 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 644 838 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 400 414 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 261 489 - -
Vifa4g04922 1294 SUPERFAMILY TRAF domain-like 84 140 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 298 399 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 655 669 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 415 489 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 1267 1294 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 685 727 - -
Vifa4g04922 1294 ProSiteProfiles Zinc finger RING-type profile. 20 59 IPR001841 -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 728 742 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 565 616 - -
Vifa4g04922 1294 SUPERFAMILY RING/U-box 13 75 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 524 547 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 756 770 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 590 607 - -
Vifa4g04922 1294 MobiDBLite consensus disorder prediction 824 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04922 Vifa-Chr4 1547426453 1547430805 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04922 - - cam:101490739 1505.73