Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04920 ATGAATATGAAGTTTACAGGCTATTCAATTTCCCTTTCATTTTCTCCTTTAACTTCCAATTTCATCAAAAATACTCCCAGATTTCAGGCCACTATATCTCGAAGAAGCCCTAGAAATTTATGCATTTCAAGCTTCTTTTGTTCCAAACAACAATCAAATGATAAACACGGCCCGGTTCCAAACCACTATCTTCCTCCATGGTTTAGTGTTGCTCCAATGATGGACTGGACGGACAATCACTATAGGACTTTAGCGCGTCTCATATCTAAGCATGCTTGGCTGTATACCGAGATGCTTGCAGCCGAAACTATTGTTCATCAAAAGGATAATCTCGACAGATTCTTGGCATATTCTCCGCAACAAAATCCCATTGTGCTTCAAATTGGAGGGAGCAATGTAGAAAGTTTGGCAAAAGCAACTGAACTTGCTAACGCGTATTGCTATGATGAGATCAATTTAAACTGTGGTTGCCCAAGTCCAAGAGTAGCTGGACATGGGAGTTTTGGTGTGCGTCTTATGCTTGACCCAAAGTTTGTTGCCGAGGCTATGTCAGCAATTGCTTCAAGTACAAATGTACCTGTCAGTGTCAAATGTCGAATTGGCGTGGATGATCATGATTCTTACGATGAACTGTGTGATTTCATATTCAAGGTTTCTTCTTTATCACCCACTAAGCATTTCATAATTCACTCAAGGAAGGCACTGCTCAATGGCATTAGCCCAGCTGAAAATAGGAGTATTCCTCCGCTGAAATACGAATACTTTTATGGCCTCTTACGAGACTTTCCAGATTTAACATTCACAATAAATGGGGGTATTGCTAGTGTTGATGAGGTTATTGCAGCTCGAGAAGCTGGGGCTCATGGCGTTATGATTGGACGTGCAGCATTCTATAACCCTTGGAATGTATTGGGACATGTTGATACTGCAATTTATGGTGCACCAAGCTGTGGTCTTACACGTCGTCAGGTTCTTGAAAAATATATAGTCTACGGGGACTCGGTGTTGGGGAAATATGGACATAAGCCAACTGTACGAGACGTCGTAAAGCCTTTACTCAATCTTTTCCATTCAGCGCCTGGTAATGGACAGTGGAAGCGCAATGCAGATGCTGCTTTTCGAAATTGCACGACCATAACATCATTTTTTGAAGAAACCCTTGAAGCAATTCCTGATTCGGTATTGGATTCGCCTGTTACAGAACCATCTCCTAGCCGCACCGATCTTTTTGCTAATGTAGACAGTTTACTGCCTCCTCCATACAGAACAAGTGAAGAGGCCATTGTTATATGCGCATAG 1299 0.4203 MNMKFTGYSISLSFSPLTSNFIKNTPRFQATISRRSPRNLCISSFFCSKQQSNDKHGPVPNHYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIVHQKDNLDRFLAYSPQQNPIVLQIGGSNVESLAKATELANAYCYDEINLNCGCPSPRVAGHGSFGVRLMLDPKFVAEAMSAIASSTNVPVSVKCRIGVDDHDSYDELCDFIFKVSSLSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGIASVDEVIAAREAGAHGVMIGRAAFYNPWNVLGHVDTAIYGAPSCGLTRRQVLEKYIVYGDSVLGKYGHKPTVRDVVKPLLNLFHSAPGNGQWKRNADAAFRNCTTITSFFEETLEAIPDSVLDSPVTEPSPSRTDLFANVDSLLPPPYRTSEEAIVICA 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04920 432 SUPERFAMILY FMN-linked oxidoreductases 67 368 - -
Vifa4g04920 432 Gene3D Aldolase class I 64 306 IPR013785 -
Vifa4g04920 432 Gene3D - 318 384 - -
Vifa4g04920 432 CDD DUS_like_FMN 68 301 IPR035587 -
Vifa4g04920 432 Pfam Dihydrouridine synthase (Dus) 70 377 IPR035587 -
Vifa4g04920 432 PANTHER FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEIN 61 425 IPR004653 GO:0002943|GO:0017150
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04920 Vifa-Chr4 1547330657 1547334587 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04920 K05539 - gmx:100779457 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04920 4 1547330657 1547334587 Vifa4g04920 4 1547330657 1547334587 ECH